Variant report

Variant	rs11846567
Chromosome Location	chr14:105846503-105846504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:105844659..105846593-chr14:105953252..105954926,2	MCF-7	breast:
2	chr14:105840393..105842684-chr14:105844314..105846959,2	MCF-7	breast:
3	chr14:105842793..105847780-chr14:105862863..105867296,6	K562	blood:
4	chr14:105844322..105847205-chr14:105857302..105858837,2	MCF-7	breast:
5	chr14:105846425..105848657-chr14:105864839..105866892,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213145	Chromatin interaction
ENSG00000179364	Chromatin interaction
ENSG00000257341	Chromatin interaction
ENSG00000226174	Chromatin interaction
ENSG00000242085	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10132353	1.00[JPT][hapmap]
rs10132438	1.00[JPT][hapmap]
rs10141048	1.00[JPT][hapmap]
rs10141334	1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs10142682	1.00[JPT][hapmap]
rs10147378	1.00[JPT][hapmap]
rs10147674	1.00[JPT][hapmap]
rs10148379	1.00[JPT][hapmap]
rs10148455	1.00[JPT][hapmap]
rs11847128	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11849421	1.00[JPT][hapmap]
rs12101178	1.00[JPT][hapmap]
rs28406946	1.00[ASN][1000 genomes]
rs28444495	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28450331	1.00[ASN][1000 genomes]
rs28461287	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28488281	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28507499	1.00[ASN][1000 genomes]
rs28529001	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28548340	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28588179	1.00[ASN][1000 genomes]
rs28733380	1.00[ASN][1000 genomes]
rs4073351	1.00[ASN][1000 genomes]
rs4074004	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4076933	0.81[ASW][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4983411	1.00[JPT][hapmap]
rs57091581	1.00[ASN][1000 genomes]
rs57244820	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58214606	1.00[ASN][1000 genomes]
rs60505080	1.00[ASN][1000 genomes]
rs61326617	1.00[ASN][1000 genomes]
rs7144362	1.00[JPT][hapmap]
rs7161158	1.00[JPT][hapmap]
rs73361060	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8004328	1.00[JPT][hapmap]
rs8008801	0.87[ASW][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.88[MKK][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8010649	1.00[JPT][hapmap]
rs8010888	0.81[ASW][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8016693	1.00[JPT][hapmap]
rs9671295	1.00[JPT][hapmap]
rs9671890	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105797000-105849200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr14:105808600-105848600	Weak transcription	HSMMtube	muscle
3	chr14:105814200-105848600	Weak transcription	Left Ventricle	heart
4	chr14:105818800-105849200	Weak transcription	A549	lung
5	chr14:105822000-105848800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:105822800-105847800	Weak transcription	Liver	Liver
7	chr14:105823600-105863400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:105823800-105849600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr14:105825600-105848200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr14:105827800-105847600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:105831000-105863800	Weak transcription	Fetal Kidney	kidney
12	chr14:105831400-105848800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr14:105831400-105864000	Weak transcription	Osteobl	bone
14	chr14:105831600-105850600	Weak transcription	Fetal Heart	heart
15	chr14:105831600-105855200	Strong transcription	Fetal Stomach	stomach
16	chr14:105831600-105863200	Weak transcription	NHDF-Ad	bronchial
17	chr14:105832200-105849600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr14:105834600-105848400	Weak transcription	Colon Smooth Muscle	Colon
19	chr14:105835200-105848600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr14:105835200-105848600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr14:105835200-105849200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr14:105835200-105849400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr14:105835400-105848800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr14:105836000-105850000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr14:105836400-105847800	Weak transcription	Aorta	Aorta
26	chr14:105836400-105848200	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr14:105836400-105848400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr14:105836400-105849000	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr14:105836600-105849000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr14:105837800-105848200	Weak transcription	NHLF	lung
31	chr14:105837800-105855200	Weak transcription	HSMM	muscle
32	chr14:105838200-105849200	Weak transcription	Fetal Lung	lung
33	chr14:105838400-105849200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr14:105842200-105852600	Weak transcription	NHEK	skin
35	chr14:105842400-105847200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr14:105842600-105848800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr14:105842600-105849600	Weak transcription	NH-A	brain
38	chr14:105842600-105856000	Weak transcription	Primary B cells from peripheral blood	blood
39	chr14:105842800-105851200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr14:105842800-105854600	Weak transcription	Primary B cells from cord blood	blood
41	chr14:105842800-105855200	Weak transcription	Primary hematopoietic stem cells	blood
42	chr14:105842800-105855800	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr14:105842800-105856400	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr14:105842800-105856400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr14:105843000-105848400	Weak transcription	Primary T cells from cord blood	blood
46	chr14:105843200-105849200	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr14:105843200-105854200	Strong transcription	Brain Hippocampus Middle	brain
48	chr14:105843400-105848200	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr14:105843600-105850200	Strong transcription	Fetal Muscle Trunk	muscle
50	chr14:105844000-105855200	Strong transcription	Brain Cingulate Gyrus	brain

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