Variant report

Variant	rs11846664
Chromosome Location	chr14:37552944-37552945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37543104..37544844-chr14:37552130..37554512,2	MCF-7	breast:
2	chr14:37548451..37550680-chr14:37552650..37555387,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10483487	1.00[GIH][hapmap]
rs17105856	1.00[EUR][1000 genomes]
rs17105876	1.00[EUR][1000 genomes]
rs17105909	1.00[EUR][1000 genomes]
rs17105921	1.00[EUR][1000 genomes]
rs17105928	1.00[EUR][1000 genomes]
rs17105938	1.00[EUR][1000 genomes]
rs17105941	1.00[EUR][1000 genomes]
rs17105991	1.00[EUR][1000 genomes]
rs17105999	1.00[EUR][1000 genomes]
rs17106020	1.00[EUR][1000 genomes]
rs17106194	1.00[EUR][1000 genomes]
rs17106252	1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs17106300	1.00[EUR][1000 genomes]
rs17106343	1.00[GIH][hapmap]
rs17106370	1.00[EUR][1000 genomes]
rs17106427	1.00[EUR][1000 genomes]
rs17106428	1.00[EUR][1000 genomes]
rs17106431	1.00[EUR][1000 genomes]
rs2093087	1.00[EUR][1000 genomes]
rs2144319	1.00[EUR][1000 genomes]
rs2180094	1.00[GIH][hapmap]
rs2415387	1.00[GIH][hapmap]
rs55764696	1.00[EUR][1000 genomes]
rs55987900	1.00[EUR][1000 genomes]
rs56167909	1.00[EUR][1000 genomes]
rs56395950	1.00[EUR][1000 genomes]
rs57432181	1.00[EUR][1000 genomes]
rs57545427	1.00[EUR][1000 genomes]
rs60179583	1.00[EUR][1000 genomes]
rs60717098	1.00[EUR][1000 genomes]
rs60846053	1.00[EUR][1000 genomes]
rs60910364	1.00[EUR][1000 genomes]
rs61200961	1.00[EUR][1000 genomes]
rs7141866	1.00[EUR][1000 genomes]
rs7147703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73256266	1.00[EUR][1000 genomes]
rs73256270	1.00[EUR][1000 genomes]
rs73256271	1.00[EUR][1000 genomes]
rs73256284	1.00[EUR][1000 genomes]
rs73256290	1.00[EUR][1000 genomes]
rs73256295	1.00[EUR][1000 genomes]
rs73258212	1.00[EUR][1000 genomes]
rs73260317	1.00[EUR][1000 genomes]
rs73260392	1.00[EUR][1000 genomes]
rs73264172	1.00[EUR][1000 genomes]
rs73266178	1.00[EUR][1000 genomes]
rs74045252	1.00[EUR][1000 genomes]
rs74045477	1.00[EUR][1000 genomes]
rs8008478	1.00[ASW][hapmap];0.85[LWK][hapmap];0.97[MKK][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes]
rs8009539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8009729	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8010025	0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9671258	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9672077	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv275403	chr14:37551041-37556357	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37552600-37553600	Flanking Active TSS	K562	blood
2	chr14:37552800-37553400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:37552800-37553600	Enhancers	Pancreas	Pancrea

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