Variant report

Variant	rs11846705
Chromosome Location	chr14:65824195-65824196
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65723600..65725474-chr14:65822150..65825144,2	MCF-7	breast:
2	chr14:65820651..65828097-chr14:65876794..65881062,12	MCF-7	breast:
3	chr14:65820274..65829265-chr14:65876318..65881127,26	MCF-7	breast:
4	chr14:65720634..65723404-chr14:65821648..65825451,4	MCF-7	breast:
5	chr14:65693998..65695540-chr14:65823003..65824928,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10144720	0.87[CEU][hapmap]
rs1038239	0.89[EUR][1000 genomes]
rs11158584	0.85[CEU][hapmap]
rs1256537	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1256541	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs1256542	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs1256544	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17180994	0.97[EUR][1000 genomes]
rs2101084	0.85[CEU][hapmap]
rs2411915	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3986780	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4899175	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7141874	0.82[AMR][1000 genomes]
rs7144530	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8015222	0.87[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8020305	0.87[CEU][hapmap];0.86[AMR][1000 genomes]
rs8021946	0.97[EUR][1000 genomes]
rs8023016	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs899960	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65814000-65824800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr14:65816800-65828000	Enhancers	Primary B cells from peripheral blood	blood
3	chr14:65819600-65824400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:65819600-65824800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:65819800-65824400	Enhancers	Placenta	Placenta
6	chr14:65819800-65824600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:65819800-65824800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr14:65821600-65831600	Weak transcription	Esophagus	oesophagus
9	chr14:65821800-65824200	Weak transcription	Lung	lung
10	chr14:65821800-65828800	Weak transcription	Psoas Muscle	Psoas
11	chr14:65822000-65824200	Weak transcription	Brain Anterior Caudate	brain
12	chr14:65822600-65834200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr14:65822800-65824200	Enhancers	NH-A	brain
14	chr14:65822800-65824400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr14:65822800-65824400	Enhancers	Primary T cells from cord blood	blood
16	chr14:65823000-65824200	Enhancers	Fetal Intestine Large	intestine
17	chr14:65823200-65824200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:65823200-65824200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr14:65823200-65824400	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr14:65823200-65824400	Enhancers	Fetal Thymus	thymus
21	chr14:65823200-65824400	Enhancers	Placenta Amnion	Placenta Amnion
22	chr14:65823200-65824600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr14:65823400-65824200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr14:65823400-65824400	Enhancers	Small Intestine	intestine
25	chr14:65823400-65825000	Flanking Active TSS	GM12878-XiMat	blood
26	chr14:65823400-65825200	Weak transcription	Gastric	stomach
27	chr14:65823400-65825400	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr14:65823400-65828600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr14:65823600-65824800	Enhancers	Colon Smooth Muscle	Colon
30	chr14:65823600-65825000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr14:65823600-65826200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr14:65823600-65826800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr14:65823600-65828800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr14:65823600-65829000	Weak transcription	HSMM	muscle
35	chr14:65823800-65824200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr14:65823800-65824200	Weak transcription	Primary B cells from cord blood	blood
37	chr14:65823800-65824200	Weak transcription	Thymus	Thymus
38	chr14:65823800-65824600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr14:65823800-65824600	Enhancers	Hela-S3	cervix
40	chr14:65823800-65824800	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr14:65823800-65824800	Enhancers	NHEK	skin
42	chr14:65823800-65826200	Weak transcription	Duodenum Mucosa	Duodenum
43	chr14:65823800-65826600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr14:65823800-65828600	Weak transcription	Osteobl	bone
45	chr14:65824000-65824200	Active TSS	Stomach Mucosa	stomach
46	chr14:65824000-65824400	Enhancers	Brain Angular Gyrus	brain
47	chr14:65824000-65824400	Enhancers	Right Ventricle	heart
48	chr14:65824000-65824400	Enhancers	Stomach Smooth Muscle	stomach
49	chr14:65824000-65824400	Weak transcription	NHDF-Ad	bronchial
50	chr14:65824000-65824600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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