Variant report

Variant	rs11846754
Chromosome Location	chr14:72393177-72393178
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10147777	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850532	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17104979	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17105032	0.83[EUR][1000 genomes]
rs17105061	0.83[EUR][1000 genomes]
rs1989628	0.83[EUR][1000 genomes]
rs2190872	0.82[ASN][1000 genomes]
rs2238278	0.82[ASN][1000 genomes]
rs2238283	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2238285	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2239270	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs23219	0.99[ASN][1000 genomes]
rs2332701	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35077074	0.88[ASN][1000 genomes]
rs35479711	0.87[ASN][1000 genomes]
rs36327	0.99[ASN][1000 genomes]
rs4902960	0.83[EUR][1000 genomes]
rs56731686	0.83[EUR][1000 genomes]
rs59307289	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1345	chr14:72349589-72395819	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72386200-72396800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links