Variant report

Variant	rs11846944
Chromosome Location	chr14:65690486-65690487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65687978..65690881-chr14:65733392..65735746,2	MCF-7	breast:
2	chr14:65689494..65692237-chr14:65695472..65698101,2	K562	blood:
3	chr14:65689122..65691456-chr14:65806206..65809002,2	MCF-7	breast:
4	chr14:65682951..65699539-chr14:65874873..65882779,51	MCF-7	breast:
5	chr14:65631009..65633878-chr14:65689261..65691263,2	MCF-7	breast:
6	chr14:65685385..65700060-chr14:65874568..65884730,76	MCF-7	breast:
7	chr14:65689123..65699940-chr14:65718655..65726829,32	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction
ENSG00000258613	Chromatin interaction
ENSG00000214759	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10131273	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143368	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10151608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57425656	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7159220	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7160062	0.80[ASN][1000 genomes]
rs7161060	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564932	chr14:65660502-65691545	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv564933	chr14:65667546-65710580	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65672800-65691400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:65674000-65691400	Weak transcription	Thymus	Thymus
3	chr14:65678600-65690600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:65686400-65691400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:65687200-65691600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:65688200-65690800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:65688200-65696400	Enhancers	Primary B cells from peripheral blood	blood
8	chr14:65688400-65693000	Enhancers	Primary T cells from cord blood	blood
9	chr14:65688600-65691400	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr14:65688800-65690600	Enhancers	Stomach Mucosa	stomach
11	chr14:65688800-65690800	Enhancers	Fetal Intestine Large	intestine
12	chr14:65688800-65692800	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr14:65689000-65690600	Enhancers	Primary B cells from cord blood	blood
14	chr14:65689000-65691400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr14:65689000-65692400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr14:65689000-65692800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr14:65689000-65693000	Enhancers	Primary T cells fromperipheralblood	blood
18	chr14:65689200-65691400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr14:65689200-65691400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr14:65689200-65691400	Weak transcription	HMEC	breast
21	chr14:65689200-65692200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr14:65689200-65695000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:65689400-65691000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr14:65689400-65691200	Weak transcription	Dnd41	blood
25	chr14:65689400-65691400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr14:65689400-65691400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr14:65689400-65691400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr14:65689400-65691400	Weak transcription	Fetal Stomach	stomach
29	chr14:65689400-65691400	Weak transcription	HSMM	muscle
30	chr14:65689400-65692000	Weak transcription	A549	lung
31	chr14:65689400-65692800	Weak transcription	Right Atrium	heart
32	chr14:65689400-65693200	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr14:65689400-65696200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr14:65689600-65691400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr14:65689600-65691400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr14:65689600-65691400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr14:65689600-65691400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr14:65689600-65691400	Weak transcription	HUVEC	blood vessel
39	chr14:65689600-65691400	Weak transcription	NHDF-Ad	bronchial
40	chr14:65689600-65691400	Weak transcription	NHEK	skin
41	chr14:65689600-65691600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr14:65689600-65691600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr14:65689600-65691800	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr14:65689800-65690800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr14:65689800-65691000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr14:65689800-65691200	Weak transcription	Placenta	Placenta
47	chr14:65689800-65691200	Weak transcription	Fetal Thymus	thymus
48	chr14:65689800-65691200	Weak transcription	Small Intestine	intestine
49	chr14:65689800-65691400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr14:65689800-65691400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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