Variant report
| Variant | rs11848427 |
|---|---|
| Chromosome Location | chr14:37490116-37490117 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:37489207..37490947-chr14:37492261..37494001,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10134363 | 0.85[JPT][hapmap] |
| rs10136755 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs10137539 | 0.86[CHB][hapmap];0.92[JPT][hapmap] |
| rs10139726 | 1.00[CHB][hapmap];0.92[JPT][hapmap] |
| rs10140136 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs10143832 | 0.80[ASN][1000 genomes] |
| rs10483486 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs12879089 | 0.86[CHB][hapmap];0.92[JPT][hapmap] |
| rs12879259 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs12883863 | 0.86[CHB][hapmap];0.90[JPT][hapmap] |
| rs12889779 | 1.00[CHB][hapmap];0.92[JPT][hapmap] |
| rs12893236 | 0.86[CHB][hapmap] |
| rs12897101 | 0.86[CHB][hapmap];0.92[JPT][hapmap] |
| rs1535239 | 0.80[ASN][1000 genomes] |
| rs17106164 | 0.86[CHB][hapmap];0.90[JPT][hapmap] |
| rs2022726 | 1.00[ASN][1000 genomes] |
| rs6571776 | 0.86[CHB][hapmap];0.90[JPT][hapmap] |
| rs6571777 | 0.86[CHB][hapmap];0.91[JPT][hapmap] |
| rs7143414 | 0.86[CHB][hapmap];0.90[JPT][hapmap] |
| rs7145475 | 0.86[CHB][hapmap];0.91[JPT][hapmap] |
| rs7149154 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs7151191 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs7359156 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8008894 | 0.86[CHB][hapmap];0.92[JPT][hapmap] |
| rs8014914 | 0.80[ASN][1000 genomes] |
| rs8015845 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs8016558 | 1.00[CHB][hapmap];0.92[JPT][hapmap] |
| rs8016567 | 0.86[CHB][hapmap];0.92[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534288 | chr14:37254539-37697745 | Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
