Variant report

Variant	rs11852887
Chromosome Location	chr15:79030578-79030579
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11072793	0.83[EUR][1000 genomes]
rs11072794	0.83[EUR][1000 genomes]
rs11072799	0.93[EUR][1000 genomes]
rs11629639	0.89[EUR][1000 genomes]
rs11629824	0.83[EUR][1000 genomes]
rs11633152	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11633170	0.83[EUR][1000 genomes]
rs11634628	0.83[EUR][1000 genomes]
rs11852909	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11856441	0.93[EUR][1000 genomes]
rs12899201	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12899940	0.81[EUR][1000 genomes]
rs12901228	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12904489	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12906022	0.81[AMR][1000 genomes]
rs12906165	0.84[AMR][1000 genomes]
rs12906847	0.84[AMR][1000 genomes]
rs12906977	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12907207	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12907432	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12907536	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12913779	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1383634	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1383635	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1809412	0.90[EUR][1000 genomes]
rs1809414	0.93[EUR][1000 genomes]
rs1814880	0.89[EUR][1000 genomes]
rs1825086	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1904920	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2017091	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2017297	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2219939	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4887078	0.86[EUR][1000 genomes]
rs71402966	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71402967	0.86[AMR][1000 genomes]
rs7176070	0.84[EUR][1000 genomes]
rs755998	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8030090	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8030335	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs899997	0.89[EUR][1000 genomes]
rs9888691	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv974606	chr15:78996783-79048337	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv977797	chr15:79029383-79031049	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv3430813	chr15:79030147-79032270	Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79029800-79030800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
2	chr15:79029800-79032800	Weak transcription	Spleen	Spleen
3	chr15:79030200-79030600	Enhancers	Stomach Smooth Muscle	stomach
4	chr15:79030400-79030600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr15:79030400-79030600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr15:79030400-79030600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:79030400-79030600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:79030400-79030600	Enhancers	Right Ventricle	heart
9	chr15:79030400-79030600	Flanking Active TSS	K562	blood
10	chr15:79030400-79030800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:79030400-79030800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:79030400-79030800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr15:79030400-79030800	Enhancers	Placenta	Placenta
14	chr15:79030400-79031000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:79030400-79031000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:79030400-79031000	Enhancers	Skeletal Muscle Male	skeletal muscle

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