Variant report

Variant	rs11853345
Chromosome Location	chr15:34471416-34471417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34469294..34472119-chr15:34650020..34652509,2	K562	blood:
2	chr15:34471045..34472710-chr15:34500105..34502660,2	K562	blood:

Variant related genes	Relation type
ENSG00000134152	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10152261	0.88[ASN][1000 genomes]
rs11852315	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11853347	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854298	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11856753	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11857604	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11857608	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11858527	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17236749	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17554484	0.88[ASN][1000 genomes]
rs17817770	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118159	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118160	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28406544	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3764236	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3829483	0.88[ASN][1000 genomes]
rs41405647	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs4486849	0.88[ASN][1000 genomes]
rs4581678	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55801303	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495624	0.88[ASN][1000 genomes]
rs7161944	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7168139	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7176526	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7179249	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7183568	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73382081	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73382086	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73384011	0.88[ASN][1000 genomes]
rs7497666	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8037674	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9672345	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9672434	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9672496	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9672544	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs9672784	0.82[AMR][1000 genomes]
rs9806468	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv3507159	chr15:34456709-34485891	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	esv3507160	chr15:34456709-34485891	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34453600-34474600	Weak transcription	Colon Smooth Muscle	Colon
2	chr15:34454000-34477400	Weak transcription	HSMM	muscle
3	chr15:34454200-34497800	Weak transcription	Osteobl	bone
4	chr15:34454600-34501200	Weak transcription	Colonic Mucosa	Colon
5	chr15:34454800-34501000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr15:34459000-34478400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:34464600-34500400	Weak transcription	Hela-S3	cervix
8	chr15:34464800-34477000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:34465000-34477800	Weak transcription	Thymus	Thymus
10	chr15:34466400-34500400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:34466600-34473400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:34466600-34482800	Weak transcription	NHDF-Ad	bronchial
13	chr15:34466800-34475200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:34466800-34477400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:34466800-34477600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:34466800-34477600	Weak transcription	Primary B cells from cord blood	blood
17	chr15:34467000-34475200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:34467000-34477200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr15:34467000-34500800	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr15:34467200-34478400	Weak transcription	Lung	lung
21	chr15:34467200-34491400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr15:34467200-34500200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:34467400-34486200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr15:34468000-34478400	Weak transcription	Dnd41	blood
25	chr15:34468000-34496400	Weak transcription	Fetal Lung	lung
26	chr15:34468000-34497800	Weak transcription	NHEK	skin
27	chr15:34468200-34475200	Weak transcription	A549	lung
28	chr15:34468200-34478200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:34468200-34485800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr15:34468200-34498000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr15:34468400-34472200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr15:34468400-34477000	Weak transcription	Primary T cells from cord blood	blood
33	chr15:34468600-34472200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:34468600-34475400	Weak transcription	Placenta	Placenta
35	chr15:34468600-34480600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:34468800-34477400	Weak transcription	Fetal Stomach	stomach
37	chr15:34469200-34477200	Weak transcription	Fetal Muscle Leg	muscle
38	chr15:34469600-34475200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr15:34469800-34475200	Weak transcription	Left Ventricle	heart
40	chr15:34470200-34474600	Weak transcription	HUVEC	blood vessel
41	chr15:34470200-34475200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:34470200-34477400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr15:34470400-34477800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr15:34471000-34472200	Enhancers	K562	blood
45	chr15:34471000-34472400	Enhancers	Fetal Heart	heart
46	chr15:34471000-34473200	Enhancers	Brain Hippocampus Middle	brain
47	chr15:34471000-34501000	Weak transcription	Aorta	Aorta
48	chr15:34471200-34472000	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr15:34471200-34472400	Enhancers	Brain Cingulate Gyrus	brain
50	chr15:34471200-34473000	Enhancers	Brain Anterior Caudate	brain

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