Variant report

Variant	rs11853683
Chromosome Location	chr15:77357413-77357414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77340819..77342632-chr15:77355039..77357924,2	K562	blood:
2	chr15:77346695..77349657-chr15:77355266..77357615,2	MCF-7	breast:
3	chr15:77352302..77353897-chr15:77355148..77357991,2	MCF-7	breast:
4	chr15:77357220..77360797-chr15:77361367..77364060,6	MCF-7	breast:
5	chr15:77354730..77357508-chr15:77359818..77362663,2	MCF-7	breast:
6	chr15:77319296..77322262-chr15:77356232..77359032,2	MCF-7	breast:
7	chr15:77345051..77347065-chr15:77356720..77358399,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000269951	Chromatin interaction
ENSG00000140391	Chromatin interaction
ENSG00000140368	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11072640	1.00[AMR][1000 genomes]
rs2469198	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs2469207	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs2469237	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs28391551	1.00[AMR][1000 genomes]
rs28402797	1.00[AMR][1000 genomes]
rs28412669	1.00[AMR][1000 genomes]
rs28421596	1.00[AMR][1000 genomes]
rs28508056	1.00[AMR][1000 genomes]
rs28641730	1.00[AMR][1000 genomes]
rs28644501	1.00[AMR][1000 genomes]
rs28744566	1.00[AMR][1000 genomes]
rs3110383	1.00[AMR][1000 genomes]
rs4886833	1.00[AMR][1000 genomes]
rs7173333	1.00[AMR][1000 genomes]
rs7178723	1.00[AMR][1000 genomes]
rs8026664	1.00[AMR][1000 genomes]
rs8035685	1.00[AMR][1000 genomes]
rs8038253	1.00[AMR][1000 genomes]
rs8038701	1.00[AMR][1000 genomes]
rs9920797	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv833058	chr15:77235895-77393640	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv517068	chr15:77254544-77381222	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv904414	chr15:77304310-77400388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
10	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77321200-77362000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:77339000-77362000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:77339200-77358000	Weak transcription	Colonic Mucosa	Colon
4	chr15:77339400-77359200	Weak transcription	Right Ventricle	heart
5	chr15:77345200-77360200	Weak transcription	Spleen	Spleen
6	chr15:77345200-77362000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:77345400-77361400	Weak transcription	Placenta	Placenta
8	chr15:77346600-77358600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr15:77346600-77359800	Genic enhancers	Primary B cells from peripheral blood	blood
10	chr15:77346600-77361200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr15:77347200-77361600	Weak transcription	Dnd41	blood
12	chr15:77347400-77358600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr15:77349000-77357600	Enhancers	Liver	Liver
14	chr15:77349200-77362000	Weak transcription	Lung	lung
15	chr15:77349400-77361000	Weak transcription	Fetal Thymus	thymus
16	chr15:77349600-77357800	Enhancers	Fetal Intestine Small	intestine
17	chr15:77349600-77358600	Weak transcription	Gastric	stomach
18	chr15:77349600-77362000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr15:77351000-77361800	Weak transcription	Pancreas	Pancrea
20	chr15:77352400-77362000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr15:77352600-77359800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:77352600-77360200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr15:77352600-77362000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr15:77353000-77359200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr15:77353000-77361800	Weak transcription	Thymus	Thymus
26	chr15:77353200-77361800	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr15:77353400-77361600	Weak transcription	Primary T cells from cord blood	blood
28	chr15:77353800-77360200	Enhancers	Stomach Mucosa	stomach
29	chr15:77353800-77362000	Weak transcription	Left Ventricle	heart
30	chr15:77354000-77357800	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr15:77354000-77361800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:77354000-77361800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr15:77354200-77357600	Enhancers	Adipose Nuclei	Adipose
34	chr15:77354200-77362000	Weak transcription	Aorta	Aorta
35	chr15:77354400-77358000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr15:77354400-77358600	Weak transcription	Ovary	ovary
37	chr15:77354400-77359400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr15:77354400-77361000	Weak transcription	Fetal Muscle Leg	muscle
39	chr15:77354400-77361800	Weak transcription	Right Atrium	heart
40	chr15:77354400-77362000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr15:77354600-77359600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr15:77354600-77359800	Weak transcription	Rectal Smooth Muscle	rectum
43	chr15:77354600-77360200	Weak transcription	Fetal Brain Female	brain
44	chr15:77354800-77357800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr15:77354800-77359200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr15:77354800-77359200	Weak transcription	Fetal Brain Male	brain
47	chr15:77354800-77359200	Weak transcription	Stomach Smooth Muscle	stomach
48	chr15:77354800-77360200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr15:77355000-77359200	Weak transcription	Fetal Heart	heart
50	chr15:77355000-77359400	Weak transcription	Brain Hippocampus Middle	brain

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