Variant report

Variant	rs11856346
Chromosome Location	chr15:78972453-78972454
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11072774	0.80[YRI][hapmap]
rs7169877	0.83[AFR][1000 genomes]
rs73467249	0.86[AFR][1000 genomes]
rs73467256	0.90[AFR][1000 genomes]
rs73467257	0.91[AFR][1000 genomes]
rs73467283	0.83[AFR][1000 genomes]
rs8031641	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv1045827	chr15:78907656-79004642	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv457208	chr15:78908032-79019610	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv570201	chr15:78908032-79019610	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv974713	chr15:78945824-78996783	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv457209	chr15:78949127-78986805	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv471256	chr15:78949127-78986805	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv570203	chr15:78949127-78986805	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv984095	chr15:78971712-78972482	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78964400-78972800	Weak transcription	Fetal Brain Female	brain
2	chr15:78965000-78973200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:78966200-78977000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:78969400-78973200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:78969400-78978000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:78969600-78973000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:78970200-78973200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr15:78970400-78973000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:78970400-78973000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr15:78970400-78973200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:78970600-78972800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr15:78971200-78973600	Enhancers	GM12878-XiMat	blood
13	chr15:78971400-78975200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:78971800-78974600	Weak transcription	Spleen	Spleen
15	chr15:78971800-78975200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:78972000-78973200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr15:78972000-78974400	Weak transcription	Esophagus	oesophagus
18	chr15:78972000-78975200	Enhancers	Fetal Brain Male	brain
19	chr15:78972000-78977400	Weak transcription	HMEC	breast
20	chr15:78972000-78980000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:78972200-78972800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:78972400-78975200	Enhancers	Primary hematopoietic stem cells	blood
23	chr15:78972400-78975200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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