Variant report

Variant	rs11858973
Chromosome Location	chr15:77328680-77328681
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77328280..77330879-chr15:77355103..77356921,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10152353	0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11072639	0.88[JPT][hapmap]
rs11636266	0.85[AMR][1000 genomes]
rs11854745	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11855392	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11858480	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16968616	0.88[JPT][hapmap]
rs16968660	1.00[CHB][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3812912	0.88[JPT][hapmap]
rs3812915	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3812916	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4075475	0.88[JPT][hapmap]
rs55775608	0.85[AMR][1000 genomes]
rs74025047	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv833058	chr15:77235895-77393640	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv517068	chr15:77254544-77381222	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	esv1808532	chr15:77257714-77332539	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1035874	chr15:77266776-77328742	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv1822592	chr15:77283956-77332539	Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv570111	chr15:77286693-77332606	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv1048833	chr15:77294593-77339260	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	esv1804890	chr15:77302969-77332482	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	esv1836749	chr15:77302969-77332606	Genic enhancers Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv904414	chr15:77304310-77400388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
16	esv1842687	chr15:77307260-77332606	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	esv1823196	chr15:77323029-77332606	Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
18	esv1830802	chr15:77323029-77332606	Weak transcription Genic enhancers Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
19	esv1839663	chr15:77323029-77332606	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
20	esv1841067	chr15:77323029-77332606	Genic enhancers Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
21	nsv570112	chr15:77326746-77332482	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	nsv570113	chr15:77326746-77332606	Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
23	nsv570114	chr15:77326746-77334499	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
24	nsv570115	chr15:77327571-77332482	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	esv1840034	chr15:77327571-77332606	ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	esv1842939	chr15:77327571-77332606	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
27	esv1849253	chr15:77327571-77332606	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
28	nsv570116	chr15:77327571-77332606	Genic enhancers Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
29	nsv570117	chr15:77327571-77334787	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
30	nsv511547	chr15:77328269-77337649	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77314800-77330000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr15:77315400-77330400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr15:77315400-77330600	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr15:77316800-77330200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr15:77317400-77329800	Strong transcription	Primary T cells from cord blood	blood
6	chr15:77317400-77330600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr15:77317600-77330400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr15:77318400-77350600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr15:77321200-77330200	Weak transcription	Brain Germinal Matrix	brain
10	chr15:77321200-77331000	Weak transcription	Fetal Brain Female	brain
11	chr15:77321200-77335400	Weak transcription	Left Ventricle	heart
12	chr15:77321200-77362000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:77323000-77336000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr15:77323200-77330600	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr15:77323200-77334200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr15:77323400-77346000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:77323800-77334200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr15:77324000-77329800	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr15:77324200-77329600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr15:77324200-77335200	Weak transcription	NH-A	brain
21	chr15:77324400-77333600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:77324400-77334000	Weak transcription	HSMM	muscle
23	chr15:77325400-77329600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr15:77325800-77329000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:77325800-77334000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr15:77326400-77330200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr15:77326400-77335200	Weak transcription	HepG2	liver
28	chr15:77326600-77330400	Genic enhancers	Spleen	Spleen
29	chr15:77326600-77334000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr15:77326800-77334800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr15:77326800-77349800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr15:77327000-77328800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr15:77327200-77330000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
34	chr15:77327200-77333000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
35	chr15:77327200-77334400	Weak transcription	Fetal Kidney	kidney
36	chr15:77327400-77330200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr15:77327400-77336400	Weak transcription	Psoas Muscle	Psoas
38	chr15:77327400-77346000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr15:77327600-77329000	Enhancers	NHEK	skin
40	chr15:77327600-77329200	Weak transcription	Fetal Intestine Large	intestine
41	chr15:77327600-77329800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr15:77327600-77330200	Strong transcription	Primary T killer memory cells from peripheral blood	blood
43	chr15:77327600-77330200	Strong transcription	Colonic Mucosa	Colon
44	chr15:77327600-77331600	Weak transcription	Brain Hippocampus Middle	brain
45	chr15:77327600-77334200	Weak transcription	Brain Anterior Caudate	brain
46	chr15:77327600-77335200	Weak transcription	Ovary	ovary
47	chr15:77327600-77335800	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr15:77327600-77338000	Weak transcription	NHDF-Ad	bronchial
49	chr15:77327800-77328800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr15:77327800-77329000	Genic enhancers	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links