Variant report

Variant	rs11862612
Chromosome Location	chr16:81109686-81109687
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr16:81109368-81111544	SK-N-SH	brain:	n/a	n/a
2	JUN	chr16:81109156-81111505	K562	blood:	n/a	chr16:81109552-81109561

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:81109459..81113813-chr16:81119137..81125158,9	MCF-7	breast:
2	chr16:81067728..81071580-chr16:81109086..81113987,13	K562	blood:
3	chr16:81109242..81112738-chr16:81125910..81131139,12	MCF-7	breast:
4	chr16:81096522..81104265-chr16:81107324..81112531,10	MCF-7	breast:
5	chr16:81039722..81044457-chr16:81106699..81112118,5	MCF-7	breast:
6	chr16:81102378..81105736-chr16:81109275..81112562,6	K562	blood:
7	chr16:81109518..81111024-chr16:81347327..81349963,2	K562	blood:
8	chr16:81038376..81043277-chr16:81108432..81112403,6	K562	blood:
9	chr16:81038376..81042418-chr16:81108432..81111584,4	K562	blood:
10	chr16:81109109..81111856-chr16:81126620..81130593,5	MCF-7	breast:
11	chr16:81068163..81070898-chr16:81108747..81112001,7	MCF-7	breast:
12	chr16:81067878..81071089-chr16:81109086..81112093,6	K562	blood:
13	chr16:81109214..81111850-chr16:81221258..81223565,2	MCF-7	breast:
14	chr16:81102378..81105736-chr16:81109334..81111887,5	K562	blood:
15	chr16:81039624..81041255-chr16:81107979..81110813,2	MCF-7	breast:
16	chr16:81068891..81069786-chr16:81109296..81110385,4	MCF-7	breast:
17	chr16:81109389..81113385-chr16:81129533..81131576,3	K562	blood:
18	chr16:81104152..81107798-chr16:81108570..81111013,4	MCF-7	breast:
19	chr16:81108969..81114076-chr16:81128464..81132360,7	K562	blood:
20	chr16:81067084..81072191-chr16:81106033..81112629,21	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000245059	TF binding region
ENSG00000260643	Chromatin interaction
ENSG00000260213	Chromatin interaction
ENSG00000261838	Chromatin interaction
ENSG00000166451	Chromatin interaction
ENSG00000166473	Chromatin interaction
ENSG00000140905	Chromatin interaction
ENSG00000166454	Chromatin interaction
ENSG00000103121	Chromatin interaction
ENSG00000261609	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11859279	1.00[AMR][1000 genomes]
rs11859373	1.00[AMR][1000 genomes]
rs11863599	1.00[AMR][1000 genomes]
rs11864984	1.00[YRI][hapmap]
rs34939440	1.00[AMR][1000 genomes]
rs35557730	1.00[AMR][1000 genomes]
rs35958849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948534	chr16:80867635-81160492	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1064164	chr16:80918138-81126967	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv542991	chr16:80918138-81126967	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
5	nsv532597	chr16:81009718-81388348	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv427984	chr16:81026691-81320341	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv1062724	chr16:81052312-81137007	Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	esv2422360	chr16:81066033-81180727	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	esv2751615	chr16:81093099-81307599	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81079400-81109800	Weak transcription	Brain Hippocampus Middle	brain
2	chr16:81080400-81110200	Weak transcription	Ovary	ovary
3	chr16:81093000-81109800	Weak transcription	Brain Anterior Caudate	brain
4	chr16:81095600-81109800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr16:81095800-81110200	Weak transcription	Fetal Stomach	stomach
6	chr16:81101000-81110000	Weak transcription	Fetal Brain Male	brain
7	chr16:81102000-81109800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr16:81105800-81109800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr16:81105800-81109800	Weak transcription	HMEC	breast
10	chr16:81105800-81109800	Weak transcription	NHEK	skin
11	chr16:81105800-81110000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr16:81105800-81110000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr16:81105800-81110000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr16:81106000-81109800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr16:81106600-81110200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr16:81107200-81109800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr16:81107400-81109800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr16:81107600-81109800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr16:81107600-81109800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr16:81107600-81109800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr16:81107600-81110200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr16:81107800-81109800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr16:81107800-81109800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr16:81107800-81109800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr16:81107800-81110000	Enhancers	Placenta	Placenta
26	chr16:81108000-81110000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr16:81109400-81109800	Enhancers	Hela-S3	cervix
28	chr16:81109400-81109800	Enhancers	K562	blood
29	chr16:81109400-81110000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr16:81109400-81110000	Enhancers	Fetal Heart	heart
31	chr16:81109400-81110000	Enhancers	Fetal Kidney	kidney
32	chr16:81109600-81109800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr16:81109600-81109800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr16:81109600-81109800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr16:81109600-81109800	Enhancers	Primary T cells from cord blood	blood
36	chr16:81109600-81109800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr16:81109600-81109800	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr16:81109600-81109800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr16:81109600-81109800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr16:81109600-81109800	Enhancers	Brain Cingulate Gyrus	brain
41	chr16:81109600-81109800	Enhancers	A549	lung
42	chr16:81109600-81109800	Enhancers	GM12878-XiMat	blood
43	chr16:81109600-81109800	Enhancers	HepG2	liver
44	chr16:81109600-81110000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr16:81109600-81110000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr16:81109600-81110000	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr16:81109600-81110000	Enhancers	Fetal Thymus	thymus
48	chr16:81109600-81110400	Flanking Active TSS	Dnd41	blood

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