Variant report

Variant	rs11874411
Chromosome Location	chr18:28672793-28672794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:28672788..28674487-chr18:28680411..28682188,2	MCF-7	breast:
2	chr18:28670381..28673006-chr18:28687292..28689679,2	K562	blood:

Variant related genes	Relation type
ENSG00000134755	Chromatin interaction
ENSG00000265888	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11874916	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11876103	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11877259	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16961206	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16961333	0.88[AMR][1000 genomes]
rs28379393	0.97[EUR][1000 genomes]
rs58689925	0.94[AMR][1000 genomes]
rs58911015	0.94[AMR][1000 genomes]
rs59270371	0.94[AMR][1000 genomes]
rs59683603	0.88[AMR][1000 genomes]
rs6506883	0.97[EUR][1000 genomes]
rs7235130	0.97[EUR][1000 genomes]
rs7244822	0.88[AMR][1000 genomes]
rs73415516	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73415573	0.94[AMR][1000 genomes]
rs73421636	0.82[AMR][1000 genomes]
rs73954506	0.88[EUR][1000 genomes]
rs8086813	0.97[EUR][1000 genomes]
rs9957742	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388313	chr18:28583296-28693160	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530788	chr18:28596461-28751891	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28640800-28680400	Weak transcription	Right Ventricle	heart
2	chr18:28642800-28680600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr18:28644800-28673600	Strong transcription	Rectal Mucosa Donor 31	rectum
4	chr18:28645400-28675000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr18:28646800-28673200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr18:28647000-28679400	Weak transcription	Fetal Kidney	kidney
7	chr18:28648600-28678800	Weak transcription	Brain Hippocampus Middle	brain
8	chr18:28649200-28680800	Weak transcription	Gastric	stomach
9	chr18:28649400-28679600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr18:28650200-28675800	Weak transcription	Stomach Mucosa	stomach
11	chr18:28652800-28679800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr18:28654200-28679800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr18:28654200-28679800	Weak transcription	Lung	lung
14	chr18:28654200-28679800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr18:28654400-28674800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr18:28656600-28673600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr18:28656600-28680200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr18:28657400-28673600	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr18:28657400-28679000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr18:28659000-28674200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr18:28659400-28673600	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr18:28660800-28676400	Weak transcription	Fetal Intestine Small	intestine
23	chr18:28660800-28679800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr18:28660800-28679800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr18:28663000-28679200	Weak transcription	Colonic Mucosa	Colon
26	chr18:28664000-28673600	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr18:28664000-28673600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr18:28664800-28673600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr18:28665600-28672800	Strong transcription	Liver	Liver
30	chr18:28665800-28672800	Strong transcription	Duodenum Mucosa	Duodenum
31	chr18:28666200-28673400	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr18:28666600-28673600	Strong transcription	Placenta Amnion	Placenta Amnion
33	chr18:28666800-28679800	Weak transcription	Esophagus	oesophagus
34	chr18:28667600-28678800	Weak transcription	HMEC	breast
35	chr18:28667800-28673200	Weak transcription	Left Ventricle	heart
36	chr18:28667800-28679400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr18:28669200-28675800	Weak transcription	Pancreas	Pancrea
38	chr18:28669400-28673200	Weak transcription	NHEK	skin
39	chr18:28669400-28675000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr18:28669600-28673600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr18:28669600-28675800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr18:28669600-28680000	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr18:28670200-28673600	Strong transcription	HepG2	liver
44	chr18:28671000-28679600	Weak transcription	Adipose Nuclei	Adipose
45	chr18:28671600-28673000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr18:28671600-28673000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr18:28671600-28678600	Weak transcription	K562	blood
48	chr18:28672000-28673200	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr18:28672000-28676200	Weak transcription	Fetal Intestine Large	intestine
50	chr18:28672000-28680200	Weak transcription	Brain Anterior Caudate	brain

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