Variant report

Variant	rs11877153
Chromosome Location	chr18:28693322-28693323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11873226	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11878075	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961260	0.86[AFR][1000 genomes]
rs16961263	0.88[AFR][1000 genomes]
rs16961322	0.88[AFR][1000 genomes]
rs16961338	0.85[AFR][1000 genomes]
rs16961339	0.85[AFR][1000 genomes]
rs16961347	0.81[AFR][1000 genomes]
rs6506882	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8089277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8095354	0.88[AFR][1000 genomes]
rs989307	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530788	chr18:28596461-28751891	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv962465	chr18:28689021-28697558	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28691800-28694600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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