Variant report

Variant	rs11878075
Chromosome Location	chr18:28685373-28685374
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11873226	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11877153	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961260	0.88[AFR][1000 genomes]
rs16961263	0.89[AFR][1000 genomes]
rs16961322	0.96[AFR][1000 genomes]
rs16961338	0.93[AFR][1000 genomes]
rs16961339	0.93[AFR][1000 genomes]
rs16961347	0.89[AFR][1000 genomes]
rs6506882	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8089277	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8095354	0.96[AFR][1000 genomes]
rs989307	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388313	chr18:28583296-28693160	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530788	chr18:28596461-28751891	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28682600-28685400	Weak transcription	Esophagus	oesophagus
2	chr18:28682800-28687200	Weak transcription	Stomach Mucosa	stomach
3	chr18:28683200-28688400	Weak transcription	Fetal Intestine Small	intestine
4	chr18:28685000-28688400	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links