Variant report

Variant	rs11879538
Chromosome Location	chr19:42979280-42979281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10401224	1.00[EUR][1000 genomes]
rs10402438	1.00[EUR][1000 genomes]
rs10404650	1.00[EUR][1000 genomes]
rs10406972	1.00[EUR][1000 genomes]
rs10407085	1.00[EUR][1000 genomes]
rs10407155	1.00[EUR][1000 genomes]
rs10407842	1.00[EUR][1000 genomes]
rs10408258	1.00[EUR][1000 genomes]
rs10409428	1.00[EUR][1000 genomes]
rs10409433	1.00[EUR][1000 genomes]
rs10409939	1.00[EUR][1000 genomes]
rs10410129	1.00[EUR][1000 genomes]
rs10410653	1.00[EUR][1000 genomes]
rs10411498	1.00[EUR][1000 genomes]
rs10411908	1.00[EUR][1000 genomes]
rs10413484	1.00[EUR][1000 genomes]
rs10415999	1.00[EUR][1000 genomes]
rs10416535	1.00[EUR][1000 genomes]
rs10418312	1.00[EUR][1000 genomes]
rs10421409	1.00[EUR][1000 genomes]
rs10421510	1.00[EUR][1000 genomes]
rs10421857	1.00[EUR][1000 genomes]
rs10422301	1.00[EUR][1000 genomes]
rs10422867	1.00[EUR][1000 genomes]
rs10423812	1.00[EUR][1000 genomes]
rs10423959	1.00[EUR][1000 genomes]
rs10423978	1.00[EUR][1000 genomes]
rs10424402	1.00[EUR][1000 genomes]
rs10425003	1.00[EUR][1000 genomes]
rs10425320	1.00[EUR][1000 genomes]
rs10425783	1.00[EUR][1000 genomes]
rs10426267	1.00[EUR][1000 genomes]
rs10426284	1.00[EUR][1000 genomes]
rs10469287	1.00[AMR][1000 genomes]
rs11878207	1.00[EUR][1000 genomes]
rs11878297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11879073	1.00[EUR][1000 genomes]
rs11880356	1.00[EUR][1000 genomes]
rs11882107	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11882801	1.00[EUR][1000 genomes]
rs12165130	1.00[EUR][1000 genomes]
rs13343322	1.00[EUR][1000 genomes]
rs13343388	1.00[EUR][1000 genomes]
rs13343719	1.00[EUR][1000 genomes]
rs13343761	1.00[EUR][1000 genomes]
rs13343834	1.00[EUR][1000 genomes]
rs13343966	1.00[EUR][1000 genomes]
rs13346837	1.00[EUR][1000 genomes]
rs2229614	1.00[EUR][1000 genomes]
rs28463673	1.00[EUR][1000 genomes]
rs28469564	1.00[EUR][1000 genomes]
rs28474957	1.00[EUR][1000 genomes]
rs28483598	1.00[EUR][1000 genomes]
rs28496975	1.00[EUR][1000 genomes]
rs28657829	1.00[EUR][1000 genomes]
rs28663042	1.00[EUR][1000 genomes]
rs28675019	1.00[EUR][1000 genomes]
rs28675764	1.00[EUR][1000 genomes]
rs28699037	1.00[EUR][1000 genomes]
rs28711448	1.00[EUR][1000 genomes]
rs28715574	1.00[EUR][1000 genomes]
rs33919763	1.00[EUR][1000 genomes]
rs35707383	1.00[EUR][1000 genomes]
rs36089262	1.00[EUR][1000 genomes]
rs41446245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59870753	1.00[EUR][1000 genomes]
rs60950516	1.00[EUR][1000 genomes]
rs7246232	1.00[EUR][1000 genomes]
rs7248473	1.00[EUR][1000 genomes]
rs7254853	1.00[EUR][1000 genomes]
rs7255343	1.00[EUR][1000 genomes]
rs7258727	1.00[EUR][1000 genomes]
rs73552879	1.00[EUR][1000 genomes]
rs73554520	1.00[EUR][1000 genomes]
rs73554531	1.00[EUR][1000 genomes]
rs8099885	1.00[EUR][1000 genomes]
rs8109258	1.00[EUR][1000 genomes]
rs9304602	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42973800-42981400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr19:42974200-42980200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr19:42974400-42984800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr19:42974600-42980200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr19:42975000-42981200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr19:42975000-42981400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr19:42975200-42980400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr19:42975600-42981600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr19:42976400-42981000	Weak transcription	Adipose Nuclei	Adipose
10	chr19:42977400-42980200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr19:42977400-42984800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr19:42977800-42979400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr19:42978000-42979400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr19:42978000-42979800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr19:42978000-42981200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr19:42978200-42980400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr19:42978400-42981200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr19:42978800-42979400	Active TSS	Brain Hippocampus Middle	brain
19	chr19:42978800-42979800	Enhancers	Brain Cingulate Gyrus	brain
20	chr19:42979000-42979400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr19:42979000-42979400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr19:42979000-42979400	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr19:42979000-42980600	Enhancers	H9 Cell Line	embryonic stem cell
24	chr19:42979200-42979400	Enhancers	Brain Substantia Nigra	brain
25	chr19:42979200-42979800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr19:42979200-42980200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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