The 2.0 version of rSNPBase

Variant report

Variant rs11880554
Chromosome Location chr19:43028272-43028273
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:43003200-43030600 Weak transcription Duodenum Smooth Muscle Duodenum
2 chr19:43003400-43028400 Weak transcription Esophagus oesophagus
3 chr19:43003400-43029400 Weak transcription Small Intestine intestine
4 chr19:43006200-43029800 Weak transcription Primary T helper cells PMA-I stimulated --
5 chr19:43013800-43032000 Weak transcription Primary T killer naive cells fromperipheralblood blood
6 chr19:43015600-43030800 Weak transcription Left Ventricle heart
7 chr19:43016000-43032400 Weak transcription Brain Anterior Caudate brain
8 chr19:43016600-43029400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
9 chr19:43016600-43031800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
10 chr19:43017400-43031400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
11 chr19:43018200-43030400 Weak transcription Rectal Smooth Muscle rectum
12 chr19:43019000-43029200 Weak transcription Stomach Mucosa stomach
13 chr19:43020400-43030400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
14 chr19:43022000-43028400 Genic enhancers HepG2 liver
15 chr19:43022200-43028600 Strong transcription Fetal Intestine Small intestine
16 chr19:43023200-43032400 Weak transcription Skeletal Muscle Male skeletal muscle
17 chr19:43023600-43029600 Weak transcription Pancreatic Islets Pancreatic Islet
18 chr19:43023600-43031600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
19 chr19:43023600-43032200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr19:43023600-43033200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
21 chr19:43025000-43030400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
22 chr19:43025600-43032000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
23 chr19:43025600-43032400 Weak transcription Right Ventricle heart
24 chr19:43026000-43029000 Weak transcription Gastric stomach
25 chr19:43026000-43030400 Weak transcription Primary T cells fromperipheralblood blood
26 chr19:43026200-43028400 Weak transcription Primary T helper cells fromperipheralblood blood
27 chr19:43026200-43028400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
28 chr19:43026200-43028600 Weak transcription Primary T regulatory cells fromperipheralblood blood
29 chr19:43026200-43032800 Weak transcription Fetal Stomach stomach
30 chr19:43026400-43029800 Weak transcription Primary T cells from cord blood blood
31 chr19:43026800-43028400 Enhancers Primary hematopoietic stem cells short term culture blood
32 chr19:43027200-43028800 Genic enhancers Breast Myoepithelial Primary Cells Breast
33 chr19:43027200-43029200 Enhancers Primary hematopoietic stem cells blood
34 chr19:43027400-43028400 Weak transcription Adipose Nuclei Adipose
35 chr19:43027400-43028400 Weak transcription Spleen Spleen
36 chr19:43027400-43029000 Weak transcription Fetal Intestine Large intestine
37 chr19:43027400-43030000 Flanking Active TSS Primary neutrophils fromperipheralblood blood
38 chr19:43027600-43028600 Enhancers Primary monocytes fromperipheralblood blood
39 chr19:43027600-43028800 Enhancers GM12878-XiMat blood
40 chr19:43027600-43029200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr19:43027600-43030400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
42 chr19:43027600-43030400 Weak transcription Lung lung
43 chr19:43027800-43030400 Weak transcription Sigmoid Colon Sigmoid Colon
44 chr19:43028000-43028600 Enhancers Primary mononuclear cells fromperipheralblood Blood
45 chr19:43028000-43028800 Enhancers Primary B cells from peripheral blood blood
46 chr19:43028000-43029000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr19:43028000-43029000 Active TSS Rectal Mucosa Donor 29 rectum
48 chr19:43028200-43028400 Flanking Active TSS Primary B cells from cord blood blood
49 chr19:43028200-43028400 Active TSS Colonic Mucosa Colon
50 chr19:43028200-43028400 Enhancers Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015