Variant report

Variant	rs11881583
Chromosome Location	chr19:42962582-42962583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10401178	1.00[CEU][hapmap]
rs10401428	0.87[AMR][1000 genomes]
rs10402853	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10403065	0.87[AMR][1000 genomes]
rs10404589	1.00[CEU][hapmap]
rs10405152	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10405179	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10405410	1.00[CEU][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes]
rs10405942	0.87[AMR][1000 genomes]
rs10406227	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10408822	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10414396	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10416108	1.00[CEU][hapmap];0.90[YRI][hapmap];0.87[AMR][1000 genomes]
rs10418090	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10418997	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10419561	0.87[AMR][1000 genomes]
rs10422191	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10423227	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10424206	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs11878959	1.00[CEU][hapmap]
rs11878991	1.00[CEU][hapmap]
rs11879033	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11880554	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs11882225	0.87[AMR][1000 genomes]
rs11882291	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11882701	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11883406	1.00[CEU][hapmap]
rs11883425	1.00[CEU][hapmap]
rs13343840	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs13345272	0.87[AMR][1000 genomes]
rs16975787	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16975799	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16975815	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16975862	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2051832	0.87[AMR][1000 genomes]
rs2051833	0.87[AMR][1000 genomes]
rs28403155	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28425201	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28473486	0.87[AMR][1000 genomes]
rs28588100	0.87[AMR][1000 genomes]
rs28625452	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57018456	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58050143	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58162305	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58702905	1.00[EUR][1000 genomes]
rs6509015	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs6509019	1.00[CEU][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes]
rs7246161	1.00[CEU][hapmap]
rs7246591	1.00[CEU][hapmap]
rs7247278	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs7248907	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7249304	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7252874	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7253634	0.80[AFR][1000 genomes]
rs7255271	0.87[AMR][1000 genomes]
rs7256226	0.87[AMR][1000 genomes]
rs7258854	1.00[CEU][hapmap]
rs8101378	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8104731	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8105525	1.00[CEU][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs8107720	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8110904	0.90[YRI][hapmap]
rs8110922	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9916999	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9917002	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42952400-42964400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr19:42955400-42964000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr19:42955400-42964600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr19:42955800-42966400	Weak transcription	GM12878-XiMat	blood
5	chr19:42957000-42966000	Weak transcription	Left Ventricle	heart
6	chr19:42957400-42964600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr19:42957400-42970600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr19:42960000-42964600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr19:42960000-42970200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr19:42960200-42963200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr19:42960200-42963400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr19:42960200-42964600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr19:42960200-42970000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr19:42960200-42975600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr19:42960400-42963200	Weak transcription	Adipose Nuclei	Adipose
16	chr19:42960400-42963200	Weak transcription	HepG2	liver
17	chr19:42960400-42965600	Weak transcription	Right Atrium	heart
18	chr19:42960400-42965800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr19:42960400-42965800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr19:42960400-42966000	Weak transcription	Esophagus	oesophagus
21	chr19:42960400-42971000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr19:42960400-42974200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr19:42960600-42965600	Weak transcription	HMEC	breast
24	chr19:42960600-42969800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr19:42961000-42966400	Weak transcription	Primary B cells from cord blood	blood
26	chr19:42961000-42970200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr19:42961600-42964000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr19:42961600-42966800	Weak transcription	Fetal Intestine Small	intestine
29	chr19:42961800-42964600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr19:42961800-42970000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr19:42961800-42970000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr19:42961800-42970200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr19:42961800-42970200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr19:42961800-42970200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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