The 2.0 version of rSNPBase

Variant report

Variant rs11882150
Chromosome Location chr19:42953832-42953833
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:42938000-42954200 Weak transcription Skeletal Muscle Male skeletal muscle
2 chr19:42947200-42954400 Weak transcription ES-I3 Cell Line embryonic stem cell
3 chr19:42947200-42954400 Weak transcription iPS-18 Cell Line embryonic stem cell
4 chr19:42947200-42954400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr19:42948200-42956800 Weak transcription iPS-20b Cell Line embryonic stem cell
6 chr19:42948600-42954400 Weak transcription HUES64 Cell Line embryonic stem cell
7 chr19:42949000-42954400 Weak transcription Pancreas Pancrea
8 chr19:42949800-42954200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
9 chr19:42950200-42955400 Enhancers Fetal Adrenal Gland Adrenal Gland
10 chr19:42952000-42957600 Enhancers HepG2 liver
11 chr19:42952200-42954600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr19:42952400-42964400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr19:42952800-42955200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
14 chr19:42952800-42955400 Enhancers Primary T helper cells PMA-I stimulated --
15 chr19:42952800-42955400 Enhancers Primary T helper 17 cells PMA-I stimulated --
16 chr19:42952800-42955800 Enhancers Stomach Mucosa stomach
17 chr19:42953000-42954400 Weak transcription iPS-15b Cell Line embryonic stem cell
18 chr19:42953000-42955200 Enhancers Primary T cells fromperipheralblood blood
19 chr19:42953000-42955400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
20 chr19:42953200-42954200 Bivalent Enhancer Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr19:42953200-42955600 Enhancers Primary T regulatory cells fromperipheralblood blood
22 chr19:42953400-42954400 Weak transcription HUES6 Cell Line embryonic stem cell
23 chr19:42953400-42954400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
24 chr19:42953400-42956600 Weak transcription H1 Cell Line embryonic stem cell
25 chr19:42953400-42957200 Enhancers Duodenum Mucosa Duodenum
26 chr19:42953600-42954400 Enhancers Primary T cells from cord blood blood
27 chr19:42953600-42954600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr19:42953600-42954600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr19:42953600-42955000 Enhancers Primary T helper naive cells from peripheral blood blood
30 chr19:42953600-42955000 Enhancers Primary T killer naive cells fromperipheralblood blood
31 chr19:42953600-42955200 Enhancers Primary T helper cells fromperipheralblood blood
32 chr19:42953600-42955400 Enhancers Breast Myoepithelial Primary Cells Breast
33 chr19:42953600-42955400 Enhancers Adipose Nuclei Adipose
34 chr19:42953600-42957800 Enhancers Rectal Mucosa Donor 31 rectum
35 chr19:42953800-42954600 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
36 chr19:42953800-42954600 Enhancers Colonic Mucosa Colon
37 chr19:42953800-42954600 Enhancers Fetal Thymus thymus
38 chr19:42953800-42954800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
39 chr19:42953800-42954800 Enhancers Hela-S3 cervix
40 chr19:42953800-42955000 Enhancers Primary hematopoietic stem cells short term culture blood
41 chr19:42953800-42955200 Enhancers Primary T helper naive cells fromperipheralblood blood
42 chr19:42953800-42955200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
43 chr19:42953800-42955200 Enhancers Primary Natural Killer cells fromperipheralblood blood
44 chr19:42953800-42955200 Enhancers Primary T killer memory cells from peripheral blood blood
45 chr19:42953800-42955200 Enhancers Liver Liver
46 chr19:42953800-42955200 Enhancers Rectal Mucosa Donor 29 rectum
47 chr19:42953800-42955400 Enhancers Fetal Intestine Small intestine
48 chr19:42953800-42955400 Enhancers A549 lung
49 chr19:42953800-42955600 Enhancers Fetal Intestine Large intestine

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Last update: Aug 31, 2015