Variant report

Variant	rs11885499
Chromosome Location	chr2:181840911-181840912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:181839700..181842326-chr2:181868169..181869713,2	K562	blood:
2	chr2:181837058..181842990-chr2:181843184..181846817,5	MCF-7	breast:
3	chr2:181837425..181840386-chr2:181840573..181842119,2	MCF-7	breast:
4	chr2:181839506..181842433-chr2:181971642..181974430,2	K562	blood:

Variant related genes	Relation type
ENSG00000170035	Chromatin interaction
ENSG00000236153	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11885073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11890538	1.00[AMR][1000 genomes]
rs11891901	1.00[AMR][1000 genomes]
rs11896331	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11898536	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11899193	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11901821	1.00[AMR][1000 genomes]
rs11902135	1.00[AMR][1000 genomes]
rs11902832	1.00[AMR][1000 genomes]
rs13025293	1.00[AMR][1000 genomes]
rs16867374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55742474	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55980983	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56276437	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56370920	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57670948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57698592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59304478	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59850603	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60753078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61244658	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6704898	1.00[AMR][1000 genomes]
rs6711045	1.00[YRI][hapmap]
rs6715119	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6716249	1.00[AMR][1000 genomes]
rs6717911	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6721914	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6737799	1.00[AMR][1000 genomes]
rs6740342	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6751625	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73974706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73974713	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73974714	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73974721	1.00[AMR][1000 genomes]
rs73974754	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73974755	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73974756	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73974761	1.00[AMR][1000 genomes]
rs73974765	1.00[AMR][1000 genomes]
rs73974766	1.00[AMR][1000 genomes]
rs73976805	1.00[AMR][1000 genomes]
rs73976807	1.00[AMR][1000 genomes]
rs73976817	1.00[AMR][1000 genomes]
rs73976819	1.00[AMR][1000 genomes]
rs73976820	1.00[AMR][1000 genomes]
rs73976867	1.00[AMR][1000 genomes]
rs73977146	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977147	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977148	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977149	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7570421	1.00[AMR][1000 genomes]
rs9967843	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9967879	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875476	chr2:181767757-181854997	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181839600-181844200	Weak transcription	HSMM	muscle
2	chr2:181840400-181842400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:181840600-181843600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:181840600-181843800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr2:181840600-181844000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:181840800-181843800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links