Variant report

Variant	rs11885999
Chromosome Location	chr2:210386175-210386176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10206817	0.85[JPT][hapmap]
rs11884711	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11885022	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11895827	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11896762	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12614655	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12621170	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12623006	0.84[EUR][1000 genomes]
rs13013173	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13025402	0.94[ASN][1000 genomes]
rs13419929	0.82[EUR][1000 genomes]
rs1563122	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1563123	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1563124	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1563125	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16843019	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16843022	0.91[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16843034	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2219086	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs288048	0.87[ASN][1000 genomes]
rs288049	0.87[ASN][1000 genomes]
rs288052	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs288054	0.93[ASN][1000 genomes]
rs288055	0.95[ASN][1000 genomes]
rs288070	0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs288071	0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs288089	0.86[EUR][1000 genomes]
rs288094	0.81[TSI][hapmap]
rs288096	0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs34951382	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35832475	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs55703768	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56164239	0.81[EUR][1000 genomes]
rs56677957	0.83[EUR][1000 genomes]
rs60120123	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7565225	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7580512	0.83[CEU][hapmap]
rs7604320	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs906831	0.81[TSI][hapmap]
rs9917164	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210364600-210387600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:210364600-210392200	Weak transcription	Pancreas	Pancrea
3	chr2:210366600-210387800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:210371400-210391000	Weak transcription	Aorta	Aorta
5	chr2:210378800-210390200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:210382200-210391600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr2:210383000-210391000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:210383200-210386200	Enhancers	Brain Germinal Matrix	brain
9	chr2:210384000-210386600	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr2:210384000-210388600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:210385200-210387000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:210385800-210386200	Enhancers	HUVEC	blood vessel
13	chr2:210385800-210386400	Enhancers	Fetal Brain Male	brain
14	chr2:210386000-210387000	Weak transcription	Fetal Brain Female	brain

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