Variant report

Variant	rs11888402
Chromosome Location	chr2:37772628-37772629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10168778	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10173816	0.81[EUR][1000 genomes]
rs10176881	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10181174	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11124590	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11887848	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11895388	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12612951	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12615363	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13002383	0.93[ASN][1000 genomes]
rs13432740	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34369565	0.90[ASN][1000 genomes]
rs34752978	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35422160	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35574342	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35617918	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35745581	0.92[ASN][1000 genomes]
rs35990829	0.90[ASN][1000 genomes]
rs4233923	0.92[ASN][1000 genomes]
rs4404250	0.91[ASN][1000 genomes]
rs4670208	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4670730	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6708088	0.81[EUR][1000 genomes]
rs6710371	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6712065	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67348553	0.90[ASN][1000 genomes]
rs72795708	0.90[ASN][1000 genomes]
rs740992	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37771400-37774000	Enhancers	Primary B cells from peripheral blood	blood
2	chr2:37771800-37773000	ZNF genes & repeats	GM12878-XiMat	blood
3	chr2:37771800-37779800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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