Variant report

Variant	rs11892180
Chromosome Location	chr2:37385656-37385657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:37370415..37372075-chr2:37384482..37387450,2	K562	blood:
2	chr2:37385156..37387851-chr2:37415682..37418467,2	K562	blood:
3	chr2:37373517..37380041-chr2:37380520..37385811,10	MCF-7	breast:
4	chr2:37381640..37387428-chr2:37421417..37425727,6	MCF-7	breast:
5	chr2:37375493..37378915-chr2:37383921..37387868,3	K562	blood:
6	chr2:37383967..37386325-chr2:37457482..37459560,2	MCF-7	breast:
7	chr2:37385569..37388130-chr2:37422191..37423882,2	K562	blood:
8	chr2:37382658..37387385-chr2:37421093..37425812,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000003509	Chromatin interaction
ENSG00000115816	Chromatin interaction
ENSG00000218739	Chromatin interaction
ENSG00000224891	Chromatin interaction
ENSG00000138068	Chromatin interaction
ENSG00000233159	Chromatin interaction
ENSG00000055332	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10177315	1.00[ASN][1000 genomes]
rs10177345	1.00[AFR][1000 genomes]
rs10194972	1.00[ASN][1000 genomes]
rs11892108	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11894496	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13388882	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13425846	1.00[ASN][1000 genomes]
rs2307472	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2307474	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2372443	1.00[ASN][1000 genomes]
rs2373188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3856498	1.00[ASN][1000 genomes]
rs4233920	1.00[ASN][1000 genomes]
rs4648150	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648153	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648156	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648158	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648160	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648163	0.86[EUR][1000 genomes]
rs4648166	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648169	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648170	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648171	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648175	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648190	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648191	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648196	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648199	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648212	1.00[ASN][1000 genomes]
rs4648216	1.00[ASN][1000 genomes]
rs4648218	1.00[ASN][1000 genomes]
rs4648219	1.00[ASN][1000 genomes]
rs4648234	1.00[ASN][1000 genomes]
rs4648237	1.00[ASN][1000 genomes]
rs55679447	1.00[ASN][1000 genomes]
rs55939105	1.00[ASN][1000 genomes]
rs62621388	1.00[ASN][1000 genomes]
rs6544054	1.00[ASN][1000 genomes]
rs6544055	1.00[ASN][1000 genomes]
rs6720519	1.00[ASN][1000 genomes]
rs6726403	1.00[ASN][1000 genomes]
rs6734153	1.00[ASN][1000 genomes]
rs6740307	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7568925	1.00[ASN][1000 genomes]
rs7590377	1.00[ASN][1000 genomes]
rs759668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs759669	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37384600-37385800	Enhancers	Brain Substantia Nigra	brain
2	chr2:37384800-37385800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr2:37384800-37385800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr2:37384800-37386000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:37384800-37386000	Enhancers	Brain Hippocampus Middle	brain
6	chr2:37384800-37387200	Weak transcription	Esophagus	oesophagus
7	chr2:37385000-37385800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr2:37385000-37385800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:37385000-37385800	Enhancers	Brain Anterior Caudate	brain
10	chr2:37385000-37385800	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr2:37385000-37386000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr2:37385000-37386600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr2:37385000-37386600	Enhancers	Brain Angular Gyrus	brain
14	chr2:37385000-37386600	Enhancers	Brain Cingulate Gyrus	brain
15	chr2:37385000-37387200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr2:37385000-37388400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr2:37385200-37386000	Bivalent Enhancer	HepG2	liver
18	chr2:37385200-37386200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr2:37385400-37386000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr2:37385600-37385800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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