Variant report

Variant	rs11896820
Chromosome Location	chr2:63664829-63664830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63648880..63650710-chr2:63662533..63665016,2	K562	blood:
2	chr15:86367748..86369747-chr2:63664289..63665809,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264406	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1109963	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11684973	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11688997	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11694619	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13003009	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13013630	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13025357	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1446568	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2166498	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs33977056	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34763417	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs36116244	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66873455	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67037366	0.80[EUR][1000 genomes]
rs6710451	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6724115	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67257875	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67356044	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs67696856	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67752811	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67987962	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7591566	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv834241	chr2:63490262-63668205	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv874234	chr2:63606001-63666590	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv874235	chr2:63622470-63709708	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv819228	chr2:63664455-63666590	Weak transcription Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63628200-63668200	Weak transcription	Fetal Kidney	kidney
2	chr2:63631800-63665600	Weak transcription	Primary B cells from cord blood	blood
3	chr2:63631800-63675800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr2:63631800-63677200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:63631800-63681200	Weak transcription	Aorta	Aorta
6	chr2:63631800-63688000	Weak transcription	Right Ventricle	heart
7	chr2:63632000-63665400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr2:63634200-63665800	Weak transcription	Fetal Heart	heart
9	chr2:63643000-63673200	Weak transcription	Left Ventricle	heart
10	chr2:63652600-63666600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:63652600-63673800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr2:63653200-63673800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:63654000-63668000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr2:63654600-63670600	Weak transcription	Fetal Muscle Leg	muscle
15	chr2:63654600-63678200	Weak transcription	Psoas Muscle	Psoas
16	chr2:63655000-63679000	Weak transcription	Primary T cells from cord blood	blood
17	chr2:63656200-63675600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr2:63657400-63675400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr2:63658600-63666800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr2:63658600-63669400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr2:63658800-63668000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr2:63658800-63674000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr2:63659200-63679200	Weak transcription	Brain Hippocampus Middle	brain
24	chr2:63659600-63679000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr2:63659800-63667400	Weak transcription	A549	lung
26	chr2:63660400-63667400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr2:63661800-63673400	Weak transcription	Fetal Brain Female	brain
28	chr2:63662000-63698000	Weak transcription	Ovary	ovary
29	chr2:63662200-63667800	Weak transcription	Fetal Brain Male	brain
30	chr2:63662200-63681400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr2:63662600-63665200	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr2:63662600-63665800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr2:63662800-63688000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr2:63663400-63667000	Strong transcription	Adipose Nuclei	Adipose
35	chr2:63663400-63670600	Weak transcription	Primary B cells from peripheral blood	blood
36	chr2:63664400-63667600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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