Variant report

Variant	rs11898077
Chromosome Location	chr2:210603164-210603165
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10183590	0.91[EUR][1000 genomes]
rs10183604	0.91[EUR][1000 genomes]
rs10490021	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs10490022	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10804176	0.94[EUR][1000 genomes]
rs10932305	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs10932306	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11674672	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11674950	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11677476	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11677489	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11677975	0.91[EUR][1000 genomes]
rs11678044	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11679862	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11680007	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11680964	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11682692	0.84[CEU][hapmap];0.91[EUR][1000 genomes]
rs11687043	0.90[EUR][1000 genomes]
rs11689771	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11692345	0.90[EUR][1000 genomes]
rs11692608	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11693202	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11884376	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11887161	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11900602	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12105654	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12105660	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12613705	0.84[CEU][hapmap];0.92[EUR][1000 genomes]
rs12614031	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs12615516	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12616589	0.85[JPT][hapmap]
rs12619203	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12619253	0.91[EUR][1000 genomes]
rs12619409	0.94[EUR][1000 genomes]
rs12622305	0.93[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1476876	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1476877	0.93[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1509468	0.85[CEU][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs1509469	0.85[JPT][hapmap]
rs16843360	0.85[JPT][hapmap]
rs16843421	0.91[EUR][1000 genomes]
rs16843453	0.84[CEU][hapmap];0.91[EUR][1000 genomes]
rs16843515	0.91[EUR][1000 genomes]
rs16843544	0.94[EUR][1000 genomes]
rs16843614	0.84[CEU][hapmap];0.94[EUR][1000 genomes]
rs16843618	0.84[CEU][hapmap];0.94[EUR][1000 genomes]
rs16843626	0.94[EUR][1000 genomes]
rs2098204	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2215624	0.90[EUR][1000 genomes]
rs2215625	0.90[EUR][1000 genomes]
rs2239553	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs2239672	0.84[CEU][hapmap];0.91[EUR][1000 genomes]
rs2268042	0.84[CEU][hapmap];0.94[EUR][1000 genomes]
rs2284360	0.94[EUR][1000 genomes]
rs2300154	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs2710477	0.92[JPT][hapmap]
rs35337581	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35872449	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3738935	0.86[JPT][hapmap]
rs3754597	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs3768810	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs3768813	0.84[CEU][hapmap];0.91[EUR][1000 genomes]
rs3768814	0.84[CEU][hapmap];0.91[EUR][1000 genomes]
rs3768826	0.84[CEU][hapmap];0.91[EUR][1000 genomes]
rs3768835	0.84[CEU][hapmap];0.91[EUR][1000 genomes]
rs3820746	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs3886931	0.90[EUR][1000 genomes]
rs56825045	0.94[EUR][1000 genomes]
rs57305145	0.84[EUR][1000 genomes]
rs57542539	0.94[EUR][1000 genomes]
rs57637604	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57853945	0.94[EUR][1000 genomes]
rs58248939	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58295121	0.94[EUR][1000 genomes]
rs58525719	0.94[EUR][1000 genomes]
rs58779755	0.94[EUR][1000 genomes]
rs59155421	0.91[EUR][1000 genomes]
rs59555743	0.94[EUR][1000 genomes]
rs60161291	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60640585	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61333809	0.94[EUR][1000 genomes]
rs61356588	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61420319	0.94[EUR][1000 genomes]
rs6716831	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6720659	0.84[CEU][hapmap];0.91[EUR][1000 genomes]
rs6742314	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73074733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074750	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73074751	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73074763	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73074778	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73074779	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73074784	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73074787	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73074791	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73074801	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73076704	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73076710	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs741006	0.84[CEU][hapmap];0.91[EUR][1000 genomes]
rs7564369	0.91[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7594601	0.84[CEU][hapmap];0.94[EUR][1000 genomes]
rs7595017	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs975551	0.85[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs975552	0.93[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875765	chr2:210537660-210618203	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210599600-210603200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:210599600-210604000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:210600800-210603400	Weak transcription	Brain Germinal Matrix	brain

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