Variant report

Variant	rs11902602
Chromosome Location	chr2:33663044-33663045
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33662537..33665066-chr2:33668209..33670652,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17013134	1.00[MEX][hapmap]
rs2445239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs625299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs625318	0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap]
rs625762	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs646374	1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6718472	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6759329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs679823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs680313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs683473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	esv2762447	chr2:33643724-33674484	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33645200-33667800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:33659400-33667400	Weak transcription	Brain Hippocampus Middle	brain
3	chr2:33660600-33665600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:33660800-33663400	Weak transcription	Lung	lung
5	chr2:33661000-33663200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:33661000-33663200	Enhancers	Osteobl	bone
7	chr2:33661000-33663600	Enhancers	NHLF	lung
8	chr2:33661200-33663200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:33661200-33663200	Enhancers	Ovary	ovary
10	chr2:33661200-33663200	Enhancers	HSMM	muscle
11	chr2:33661200-33663200	Enhancers	HSMMtube	muscle
12	chr2:33661200-33663400	Enhancers	K562	blood
13	chr2:33661200-33664600	Active TSS	Adipose Nuclei	Adipose
14	chr2:33661200-33665200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr2:33661400-33663200	Active TSS	Right Ventricle	heart
16	chr2:33661400-33663600	Active TSS	Fetal Muscle Leg	muscle
17	chr2:33661400-33664400	Active TSS	Right Atrium	heart
18	chr2:33661400-33664800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
19	chr2:33661600-33664000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr2:33661800-33663600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr2:33661800-33667600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr2:33662200-33663200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr2:33662200-33663200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr2:33662200-33663200	Enhancers	HMEC	breast
25	chr2:33662400-33663200	Active TSS	Fetal Intestine Small	intestine
26	chr2:33662400-33663200	Enhancers	NH-A	brain
27	chr2:33662600-33663200	Active TSS	Fetal Kidney	kidney
28	chr2:33662600-33664400	Weak transcription	Fetal Heart	heart
29	chr2:33662600-33664400	Active TSS	Left Ventricle	heart
30	chr2:33662600-33665000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:33662800-33663200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr2:33662800-33663200	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr2:33662800-33663400	Enhancers	Muscle Satellite Cultured Cells	--
34	chr2:33662800-33665000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr2:33662800-33667200	Weak transcription	Psoas Muscle	Psoas
36	chr2:33662800-33670200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr2:33663000-33663200	Active TSS	Fetal Lung	lung
38	chr2:33663000-33663200	Flanking Active TSS	HUVEC	blood vessel
39	chr2:33663000-33663200	Flanking Active TSS	NHDF-Ad	bronchial
40	chr2:33663000-33663400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr2:33663000-33664400	Weak transcription	Fetal Muscle Trunk	muscle

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