Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11905416	1.00[EUR][1000 genomes]
rs11907337	1.00[EUR][1000 genomes]
rs11907441	1.00[EUR][1000 genomes]
rs11908251	1.00[EUR][1000 genomes]
rs1475408	1.00[EUR][1000 genomes]
rs1603419	1.00[EUR][1000 genomes]
rs57839314	1.00[EUR][1000 genomes]
rs6036734	1.00[EUR][1000 genomes]
rs6036735	1.00[EUR][1000 genomes]
rs6036736	1.00[EUR][1000 genomes]
rs6036738	1.00[EUR][1000 genomes]
rs6036739	1.00[EUR][1000 genomes]
rs6036740	1.00[EUR][1000 genomes]
rs60401696	1.00[EUR][1000 genomes]
rs6049582	1.00[EUR][1000 genomes]
rs6049583	1.00[EUR][1000 genomes]
rs6049584	1.00[EUR][1000 genomes]
rs6049586	1.00[EUR][1000 genomes]
rs6049587	1.00[EUR][1000 genomes]
rs6049588	1.00[EUR][1000 genomes]
rs6049591	1.00[EUR][1000 genomes]
rs6049592	1.00[EUR][1000 genomes]
rs6049596	1.00[EUR][1000 genomes]
rs6049597	1.00[EUR][1000 genomes]
rs6049599	1.00[EUR][1000 genomes]
rs6049600	1.00[EUR][1000 genomes]
rs6049602	1.00[EUR][1000 genomes]
rs6049605	1.00[EUR][1000 genomes]
rs6114706	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114710	0.81[AFR][1000 genomes]
rs7273213	1.00[EUR][1000 genomes]
rs73339982	1.00[EUR][1000 genomes]
rs73341652	1.00[EUR][1000 genomes]
rs7346006	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24401200-24412400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:24403400-24411400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:24407200-24412600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr20:24407400-24411600	Weak transcription	Fetal Stomach	stomach
5	chr20:24407600-24410800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr20:24407600-24413000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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