Variant report
| Variant | rs11908251 |
|---|---|
| Chromosome Location | chr20:24350665-24350666 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:24347069..24348854-chr20:24350597..24353212,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs11905416 | 1.00[EUR][1000 genomes] |
| rs11907190 | 1.00[EUR][1000 genomes] |
| rs11907337 | 1.00[EUR][1000 genomes] |
| rs11907441 | 1.00[EUR][1000 genomes] |
| rs1475408 | 1.00[EUR][1000 genomes] |
| rs1603419 | 1.00[EUR][1000 genomes] |
| rs57839314 | 1.00[EUR][1000 genomes] |
| rs6036734 | 1.00[EUR][1000 genomes] |
| rs6036735 | 1.00[EUR][1000 genomes] |
| rs6036736 | 1.00[EUR][1000 genomes] |
| rs6036738 | 1.00[EUR][1000 genomes] |
| rs6036739 | 1.00[EUR][1000 genomes] |
| rs6036740 | 1.00[EUR][1000 genomes] |
| rs60401696 | 1.00[EUR][1000 genomes] |
| rs6049582 | 1.00[EUR][1000 genomes] |
| rs6049583 | 1.00[EUR][1000 genomes] |
| rs6049584 | 1.00[EUR][1000 genomes] |
| rs6049586 | 1.00[EUR][1000 genomes] |
| rs6049587 | 1.00[EUR][1000 genomes] |
| rs6049588 | 1.00[EUR][1000 genomes] |
| rs6049591 | 1.00[EUR][1000 genomes] |
| rs6049592 | 1.00[EUR][1000 genomes] |
| rs6049596 | 1.00[EUR][1000 genomes] |
| rs6049597 | 1.00[EUR][1000 genomes] |
| rs6049599 | 1.00[EUR][1000 genomes] |
| rs6049600 | 1.00[EUR][1000 genomes] |
| rs6049602 | 1.00[EUR][1000 genomes] |
| rs6049605 | 1.00[EUR][1000 genomes] |
| rs6114706 | 1.00[EUR][1000 genomes] |
| rs7273213 | 1.00[EUR][1000 genomes] |
| rs73339982 | 1.00[EUR][1000 genomes] |
| rs73341652 | 1.00[EUR][1000 genomes] |
| rs7346006 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv9793 | chr20:23939613-24734850 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv1058146 | chr20:24210196-24531087 | Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv833946 | chr20:24320375-24490702 | Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:24346000-24351600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr20:24349200-24360000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
