Variant report

Variant	rs11915042
Chromosome Location	chr3:81834060-81834061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11127740	0.84[CEU][hapmap]
rs11707026	0.85[CHD][hapmap];0.82[GIH][hapmap];0.85[TSI][hapmap]
rs11710970	0.96[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap]
rs11711331	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11712243	0.90[EUR][1000 genomes]
rs13072957	0.84[CEU][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.97[TSI][hapmap]
rs13073613	0.86[GIH][hapmap];0.82[TSI][hapmap]
rs13074632	0.87[EUR][1000 genomes]
rs13079104	0.86[GIH][hapmap];0.82[TSI][hapmap]
rs13080520	0.82[GIH][hapmap]
rs13083476	0.90[EUR][1000 genomes]
rs13088000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13099615	0.84[CEU][hapmap]
rs1375086	0.80[GIH][hapmap]
rs1464790	0.83[CHB][hapmap];0.86[GIH][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs1464791	0.83[EUR][1000 genomes]
rs17019299	0.80[EUR][1000 genomes]
rs2053805	0.84[CEU][hapmap];0.85[CHD][hapmap];0.84[GIH][hapmap];0.97[TSI][hapmap]
rs2229519	0.85[CHD][hapmap];0.82[GIH][hapmap];0.88[TSI][hapmap]
rs2290081	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2594547	0.83[GIH][hapmap]
rs2594551	0.83[GIH][hapmap]
rs2594562	0.83[GIH][hapmap]
rs2680245	0.83[GIH][hapmap]
rs2691093	0.89[GIH][hapmap]
rs2873054	0.85[EUR][1000 genomes]
rs3755713	0.83[CEU][hapmap];0.83[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs3772882	0.96[CEU][hapmap];0.95[GIH][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs3772883	0.96[CEU][hapmap];0.95[GIH][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs3772884	0.84[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs3772891	0.88[TSI][hapmap]
rs3772896	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3772899	0.84[GIH][hapmap]
rs3772902	0.82[GIH][hapmap]
rs3772912	0.96[CEU][hapmap];0.84[GIH][hapmap]
rs3821548	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs3821551	0.84[CEU][hapmap]
rs3849570	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs3849571	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3860595	0.96[CEU][hapmap];0.91[GIH][hapmap];0.83[EUR][1000 genomes]
rs3943556	0.83[CEU][hapmap]
rs4411908	0.96[CEU][hapmap];0.95[GIH][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs6548773	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6765917	0.85[EUR][1000 genomes]
rs6795133	0.83[CEU][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];0.97[TSI][hapmap]
rs6803932	0.83[GIH][hapmap]
rs7620240	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7631052	0.80[EUR][1000 genomes]
rs7634258	0.84[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];0.97[TSI][hapmap]
rs7641973	0.83[EUR][1000 genomes]
rs9817181	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818006	0.85[EUR][1000 genomes]
rs9826270	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9842330	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11915042	GBE1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81834000-81834800	Enhancers	Fetal Brain Male	brain

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