Variant report

Variant	rs11915870
Chromosome Location	chr3:23243473-23243474
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11915691	1.00[AMR][1000 genomes]
rs11922172	0.84[AFR][1000 genomes]
rs55735302	1.00[AMR][1000 genomes]
rs57027356	0.84[AFR][1000 genomes]
rs59513149	1.00[AMR][1000 genomes]
rs73821166	1.00[AFR][1000 genomes]
rs73821240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73821248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73821263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73821292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73821295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823446	0.84[AFR][1000 genomes]
rs73823457	1.00[AMR][1000 genomes]
rs73823465	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23237800-23243800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr3:23237800-23244000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:23238000-23243800	Weak transcription	Aorta	Aorta
4	chr3:23240800-23243600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:23241000-23243600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:23241000-23243600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:23241200-23243600	Weak transcription	Adipose Nuclei	Adipose
8	chr3:23242800-23243600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:23243000-23243600	Enhancers	Brain Anterior Caudate	brain
10	chr3:23243000-23243600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr3:23243000-23243800	Weak transcription	Left Ventricle	heart
12	chr3:23243200-23243600	Enhancers	Fetal Brain Female	brain
13	chr3:23243400-23243600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
14	chr3:23243400-23243600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:23243400-23243600	Enhancers	Liver	Liver
16	chr3:23243400-23243600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:23243400-23243600	Enhancers	Stomach Smooth Muscle	stomach
18	chr3:23243400-23243800	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr3:23243400-23246000	Active TSS	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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