Variant report

Variant	rs11916331
Chromosome Location	chr3:46262216-46262217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11916576	1.00[EUR][1000 genomes]
rs11916833	1.00[EUR][1000 genomes]
rs11919361	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11919363	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11923521	1.00[EUR][1000 genomes]
rs41459051	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46257800-46263400	Weak transcription	Lung	lung
2	chr3:46259400-46262600	Weak transcription	GM12878-XiMat	blood
3	chr3:46262000-46266000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:46262200-46262800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr3:46262200-46263000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:46262200-46263200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr3:46262200-46265400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:46262200-46265600	Enhancers	Primary hematopoietic stem cells	blood
9	chr3:46262200-46267000	Enhancers	Primary B cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links