Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11917687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919924	0.87[AFR][1000 genomes]
rs11927598	0.90[AFR][1000 genomes]
rs11927607	0.90[AFR][1000 genomes]
rs11927652	0.87[AFR][1000 genomes]
rs11928446	0.89[AFR][1000 genomes]
rs12637424	0.90[AFR][1000 genomes]
rs12638051	0.89[AFR][1000 genomes]
rs1597081	0.90[AFR][1000 genomes]
rs1900646	0.90[AFR][1000 genomes]
rs35382880	0.90[AFR][1000 genomes]
rs4839653	0.88[ASN][1000 genomes]
rs67219537	0.85[AFR][1000 genomes]
rs6782658	0.90[AFR][1000 genomes]
rs6782663	0.89[AFR][1000 genomes]
rs6785426	0.88[AFR][1000 genomes]
rs6794012	0.85[AFR][1000 genomes]
rs6796864	0.83[AFR][1000 genomes]
rs9825562	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834982	0.88[AFR][1000 genomes]
rs9835877	0.90[AFR][1000 genomes]
rs9835894	0.88[AFR][1000 genomes]
rs9836173	0.90[AFR][1000 genomes]
rs9863260	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9873340	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv877566	chr3:143397740-143421221	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143370800-143420800	Weak transcription	Primary T cells from cord blood	blood
2	chr3:143394200-143470200	Weak transcription	Primary B cells from cord blood	blood
3	chr3:143418000-143431200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:143418800-143426600	Weak transcription	Fetal Lung	lung
5	chr3:143418800-143428600	Weak transcription	Brain Angular Gyrus	brain
6	chr3:143419000-143426800	Weak transcription	Psoas Muscle	Psoas
7	chr3:143419200-143428400	Weak transcription	Brain Anterior Caudate	brain
8	chr3:143419800-143420400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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