Variant report

Variant	rs11917849
Chromosome Location	chr3:23241818-23241819
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13325712	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6550744	0.83[AFR][1000 genomes]
rs9812616	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9847733	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9850944	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23237600-23242800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:23237800-23243800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr3:23237800-23244000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:23238000-23243800	Weak transcription	Aorta	Aorta
5	chr3:23240000-23242000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:23240800-23243600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:23241000-23243600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:23241000-23243600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr3:23241200-23243600	Weak transcription	Adipose Nuclei	Adipose
10	chr3:23241400-23242800	Weak transcription	Left Ventricle	heart
11	chr3:23241400-23243400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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