Variant report

Variant	rs11918762
Chromosome Location	chr3:116001232-116001233
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13073491	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.82[TSI][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1563938	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16824799	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs1712999	1.00[CHD][hapmap]
rs17646052	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs17702596	1.00[CHB][hapmap]
rs17704285	1.00[CHD][hapmap]
rs34840522	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35300468	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35406989	0.91[ASN][1000 genomes]
rs35910525	0.98[ASN][1000 genomes]
rs4831093	1.00[CHB][hapmap]
rs55893774	0.96[ASN][1000 genomes]
rs6438312	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6775293	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6809953	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7611085	0.83[CHD][hapmap]
rs7639095	0.91[ASN][1000 genomes]
rs7639424	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7645165	0.89[ASW][hapmap];0.81[GIH][hapmap];0.97[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs957783	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.86[TSI][hapmap];0.82[YRI][hapmap]
rs9811136	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs9877364	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv3957	chr3:115986950-116032625	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115987400-116006200	Weak transcription	Brain Angular Gyrus	brain
2	chr3:115997200-116017200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:115998200-116006000	Weak transcription	Brain Germinal Matrix	brain
4	chr3:115999400-116014000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:115999600-116001400	Enhancers	Brain Hippocampus Middle	brain
6	chr3:115999600-116003800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:115999600-116004000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:115999600-116004600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:115999600-116006200	Weak transcription	Fetal Lung	lung
10	chr3:115999800-116002000	Enhancers	Colon Smooth Muscle	Colon
11	chr3:115999800-116003800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr3:115999800-116004000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr3:115999800-116004200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:115999800-116006000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr3:116000000-116003800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:116000000-116004000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr3:116000200-116002000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr3:116000400-116002000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:116000400-116004600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr3:116000400-116006000	Weak transcription	Brain Substantia Nigra	brain
21	chr3:116000600-116006400	Weak transcription	Brain Anterior Caudate	brain
22	chr3:116000800-116005200	Weak transcription	Fetal Brain Male	brain
23	chr3:116000800-116006000	Weak transcription	Fetal Brain Female	brain
24	chr3:116000800-116006200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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