Variant report

Variant	rs11919361
Chromosome Location	chr3:46270359-46270360
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46268227..46270497-chr3:46275042..46277907,2	MCF-7	breast:
2	chr3:46269063..46271111-chr3:46276199..46278467,2	K562	blood:
3	chr3:46262763..46265229-chr3:46268734..46270936,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11916331	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11916576	1.00[EUR][1000 genomes]
rs11916833	1.00[EUR][1000 genomes]
rs11919363	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11923521	1.00[EUR][1000 genomes]
rs41459051	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46264400-46276400	Weak transcription	Fetal Thymus	thymus
2	chr3:46265600-46276400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:46268600-46270800	Enhancers	Primary B cells from cord blood	blood
4	chr3:46269000-46271200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:46269000-46271800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:46269200-46270400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:46269200-46270800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:46269400-46270400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:46269400-46270400	Enhancers	HSMM	muscle
10	chr3:46269400-46270400	Enhancers	NHEK	skin
11	chr3:46269400-46270400	Enhancers	NHLF	lung
12	chr3:46269400-46272000	Enhancers	Primary hematopoietic stem cells	blood
13	chr3:46269600-46270400	Enhancers	Hela-S3	cervix
14	chr3:46269600-46270600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:46269600-46270600	Enhancers	Primary B cells from peripheral blood	blood
16	chr3:46269600-46270800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr3:46269800-46270400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr3:46269800-46270400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:46269800-46270400	Weak transcription	Placenta	Placenta
20	chr3:46269800-46270400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr3:46270000-46270400	Enhancers	Muscle Satellite Cultured Cells	--
22	chr3:46270000-46270600	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr3:46270000-46270600	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr3:46270000-46271800	Enhancers	Fetal Lung	lung
25	chr3:46270200-46270600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr3:46270200-46270600	Bivalent Enhancer	NHDF-Ad	bronchial

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