Variant report

Variant	rs11920118
Chromosome Location	chr3:34600758-34600759
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13081272	0.90[ASN][1000 genomes]
rs1520625	0.92[ASN][1000 genomes]
rs17031936	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28657868	0.91[ASN][1000 genomes]
rs36059582	0.92[ASN][1000 genomes]
rs7639229	0.85[EUR][1000 genomes]
rs9311058	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007906	chr3:34466966-34607465	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11920118	CMTM8	cis	parietal	SCAN
rs11920118	TRANK1	cis	parietal	SCAN
rs11920118	MX1	trans	cerebellum	SCAN
rs11920118	ACAA1	cis	cerebellum	SCAN
rs11920118	CCR4	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34596600-34600800	Weak transcription	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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