Variant report

Variant	rs11921571
Chromosome Location	chr3:69463987-69463988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10510974	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11916346	0.87[AFR][1000 genomes]
rs11917290	0.87[AFR][1000 genomes]
rs11919150	0.87[AFR][1000 genomes]
rs11926441	1.00[AMR][1000 genomes]
rs11928996	0.83[AFR][1000 genomes]
rs17005793	1.00[AMR][1000 genomes]
rs17005804	1.00[AMR][1000 genomes]
rs17005815	0.83[AFR][1000 genomes]
rs17005821	0.87[AFR][1000 genomes]
rs17005825	1.00[AMR][1000 genomes]
rs17005826	0.87[AFR][1000 genomes]
rs17005829	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17005831	0.87[AFR][1000 genomes]
rs17005837	0.84[AFR][1000 genomes]
rs17005844	0.83[AFR][1000 genomes]
rs17005849	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17043802	1.00[AMR][1000 genomes]
rs72937857	1.00[AMR][1000 genomes]
rs72937877	0.81[AFR][1000 genomes]
rs72937883	0.81[AFR][1000 genomes]
rs72937885	0.81[AFR][1000 genomes]
rs72937887	0.83[AFR][1000 genomes]
rs72937889	0.83[AFR][1000 genomes]
rs72937895	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937901	0.85[AFR][1000 genomes]
rs72937902	0.87[AFR][1000 genomes]
rs72939655	0.95[AFR][1000 genomes]
rs72939706	0.87[AFR][1000 genomes]
rs72939709	0.87[AFR][1000 genomes]
rs72939711	0.87[AFR][1000 genomes]
rs72939718	0.87[AFR][1000 genomes]
rs72939723	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2760780	chr3:69413876-69513947	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426797	chr3:69433086-69777229	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69457000-69470800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:69459600-69479600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr3:69459800-69469600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:69461200-69468400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:69461400-69469600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:69461800-69464000	Enhancers	Fetal Brain Male	brain
7	chr3:69461800-69467200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:69462000-69466800	Weak transcription	HMEC	breast
9	chr3:69462200-69466800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:69462600-69466800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:69462600-69467600	Weak transcription	NHEK	skin
12	chr3:69463000-69467000	Weak transcription	Fetal Lung	lung
13	chr3:69463200-69464000	Enhancers	Dnd41	blood
14	chr3:69463400-69464000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:69463400-69464600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:69463600-69464000	Enhancers	Fetal Thymus	thymus
17	chr3:69463600-69474600	Weak transcription	Fetal Brain Female	brain
18	chr3:69463800-69467400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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