Variant report

Variant	rs11923652
Chromosome Location	chr3:46183612-46183613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11916576	1.00[AFR][1000 genomes]
rs11916665	1.00[EUR][1000 genomes]
rs13315955	1.00[EUR][1000 genomes]
rs7625949	1.00[EUR][1000 genomes]
rs9815691	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46173800-46184400	Weak transcription	Spleen	Spleen
2	chr3:46174000-46202800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:46182400-46184200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr3:46183000-46184600	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr3:46183000-46187200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:46183200-46184600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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