Variant report

Variant	rs11926441
Chromosome Location	chr3:69473210-69473211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10510974	1.00[AMR][1000 genomes]
rs11921571	1.00[AMR][1000 genomes]
rs17005793	1.00[AMR][1000 genomes]
rs17005804	1.00[AMR][1000 genomes]
rs17005825	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17005829	1.00[AMR][1000 genomes]
rs17005849	1.00[AMR][1000 genomes]
rs17043802	1.00[AMR][1000 genomes]
rs72937857	1.00[AMR][1000 genomes]
rs72937895	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2760780	chr3:69413876-69513947	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426797	chr3:69433086-69777229	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69459600-69479600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr3:69463600-69474600	Weak transcription	Fetal Brain Female	brain
3	chr3:69469600-69473400	Enhancers	HMEC	breast
4	chr3:69470400-69479600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:69470600-69475600	Weak transcription	Brain Substantia Nigra	brain
6	chr3:69470600-69479400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr3:69470600-69480000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:69470800-69479200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr3:69472400-69473600	Genic enhancers	NHEK	skin
10	chr3:69472600-69479000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:69473000-69473400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:69473000-69477400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:69473000-69477800	Weak transcription	HSMMtube	muscle
14	chr3:69473200-69476200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:69473200-69477600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:69473200-69478000	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links