Variant report

Variant	rs11926517
Chromosome Location	chr3:145977032-145977033
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10222588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10737947	0.83[CHB][hapmap]
rs10935611	0.83[CHB][hapmap]
rs11915448	0.83[CHB][hapmap]
rs12632757	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12633074	0.80[ASN][1000 genomes]
rs1398122	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1398125	0.91[ASN][1000 genomes]
rs1512080	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1512081	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs1512890	0.83[CHB][hapmap]
rs1606434	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1877511	0.84[CHB][hapmap]
rs1913184	0.83[CHB][hapmap]
rs2036980	0.83[CHB][hapmap]
rs2175544	0.83[CHB][hapmap]
rs2175545	0.80[ASN][1000 genomes]
rs2867082	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2867084	0.81[ASN][1000 genomes]
rs2903479	0.84[CHB][hapmap]
rs3762686	0.82[CHB][hapmap]
rs3762688	0.83[CHB][hapmap]
rs3792338	0.83[CHB][hapmap]
rs3804652	0.89[YRI][hapmap]
rs3804653	0.89[YRI][hapmap]
rs3804654	0.84[CHB][hapmap]
rs3828377	0.88[YRI][hapmap]
rs3828378	0.85[YRI][hapmap]
rs4273339	0.83[CHB][hapmap]
rs4475004	0.86[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4488802	0.83[CHB][hapmap]
rs4610193	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4681307	0.80[ASN][1000 genomes]
rs4681308	0.80[ASN][1000 genomes]
rs4681310	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6440421	0.83[CHB][hapmap]
rs6770057	0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs6770163	0.84[CHB][hapmap]
rs6770278	0.84[CHB][hapmap]
rs6775520	0.91[ASN][1000 genomes]
rs6792732	0.80[ASN][1000 genomes]
rs6800307	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6805377	0.80[ASN][1000 genomes]
rs7430290	0.80[ASN][1000 genomes]
rs7621841	0.83[CHB][hapmap]
rs7634568	0.80[ASN][1000 genomes]
rs7643778	0.83[CHB][hapmap]
rs925464	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9289719	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9826591	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9830892	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9836419	0.83[CHB][hapmap];0.89[YRI][hapmap];0.87[ASN][1000 genomes]
rs9838866	0.83[CHB][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9855695	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs9858823	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9859273	0.83[CHB][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9863647	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs9873891	0.82[CHB][hapmap];0.80[JPT][hapmap];0.87[ASN][1000 genomes]
rs9875799	0.80[ASN][1000 genomes]
rs9877004	0.84[CHB][hapmap]
rs9881755	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877614	chr3:145903426-146025896	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv877615	chr3:145910430-145988231	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv877616	chr3:145921954-145983688	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3333990	chr3:145950303-145982133	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145975600-145982200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:145975600-145982800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:145976000-145982800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:145976200-145983600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:145977000-145984600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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