Variant report

Variant	rs11926683
Chromosome Location	chr3:81865637-81865638
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11917955	1.00[CHB][hapmap]
rs11918127	1.00[CHB][hapmap]
rs11922735	1.00[EUR][1000 genomes]
rs13314509	1.00[EUR][1000 genomes]
rs13315052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13320194	1.00[CHB][hapmap]
rs13323074	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13433893	1.00[CHB][hapmap]
rs1524555	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17019144	1.00[CHB][hapmap]
rs17019176	1.00[CHB][hapmap]
rs17019323	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2291593	1.00[CHB][hapmap]
rs3772893	0.86[YRI][hapmap];0.89[AMR][1000 genomes]
rs3772907	1.00[CHB][hapmap]
rs6766394	1.00[CHB][hapmap]
rs6769382	1.00[EUR][1000 genomes]
rs6771000	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6774605	1.00[CHB][hapmap]
rs6790574	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6805400	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6807821	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72908088	0.94[EUR][1000 genomes]
rs72908097	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73855803	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7616562	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7619190	1.00[CHB][hapmap]
rs7624752	1.00[EUR][1000 genomes]
rs7642141	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9309878	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9810461	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9811220	1.00[EUR][1000 genomes]
rs9811796	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes]
rs9815895	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9823236	1.00[CHB][hapmap]
rs9823805	1.00[CHB][hapmap]
rs9844254	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap]
rs9846063	1.00[EUR][1000 genomes]
rs9854689	1.00[EUR][1000 genomes]
rs9855849	1.00[EUR][1000 genomes]
rs9860516	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9862555	1.00[CHB][hapmap]
rs9865604	0.89[EUR][1000 genomes]
rs9866781	1.00[EUR][1000 genomes]
rs9871455	1.00[EUR][1000 genomes]
rs9878273	1.00[CHB][hapmap]
rs9881652	0.89[EUR][1000 genomes]
rs998205	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs998207	1.00[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81852400-81872200	Weak transcription	Left Ventricle	heart
2	chr3:81863800-81866000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:81864600-81867600	Flanking Active TSS	Dnd41	blood
4	chr3:81864800-81866200	Enhancers	Fetal Kidney	kidney
5	chr3:81864800-81867000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:81865000-81867400	Enhancers	Fetal Thymus	thymus
7	chr3:81865200-81866800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:81865200-81867000	Enhancers	Liver	Liver
9	chr3:81865400-81866400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:81865400-81866800	Enhancers	NHDF-Ad	bronchial
11	chr3:81865400-81867000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr3:81865600-81866000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr3:81865600-81866000	Enhancers	Brain Hippocampus Middle	brain
14	chr3:81865600-81866000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr3:81865600-81866200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:81865600-81866200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr3:81865600-81866400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:81865600-81866400	Enhancers	Fetal Lung	lung
19	chr3:81865600-81866600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr3:81865600-81866800	Flanking Active TSS	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links