Variant report

Variant	rs11927159
Chromosome Location	chr3:119309154-119309155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11915800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11918611	1.00[EUR][1000 genomes]
rs11919422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11927863	1.00[EUR][1000 genomes]
rs12106815	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12106869	1.00[EUR][1000 genomes]
rs13317715	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16830032	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs58318736	1.00[EUR][1000 genomes]
rs61575899	1.00[EUR][1000 genomes]
rs6767853	1.00[EUR][1000 genomes]
rs72968486	1.00[EUR][1000 genomes]
rs73854857	1.00[EUR][1000 genomes]
rs73857025	1.00[EUR][1000 genomes]
rs7611869	1.00[EUR][1000 genomes]
rs9821005	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9860332	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9861284	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9861344	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9866191	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9876397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9876408	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9876504	0.86[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9881550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829695	chr3:119178890-119367996	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv1831824	chr3:119263607-119402474	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv3963	chr3:119301064-119345904	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv522542	chr3:119306930-119309260	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119299200-119314600	Weak transcription	Ovary	ovary
2	chr3:119299200-119315000	Weak transcription	Gastric	stomach
3	chr3:119299400-119314200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:119299400-119314400	Weak transcription	Brain Angular Gyrus	brain
5	chr3:119299600-119314200	Weak transcription	Brain Substantia Nigra	brain
6	chr3:119299600-119314200	Weak transcription	Psoas Muscle	Psoas
7	chr3:119299800-119309200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr3:119299800-119314600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:119299800-119314600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr3:119299800-119318000	Weak transcription	Fetal Heart	heart
11	chr3:119303600-119309800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr3:119305400-119314400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:119305600-119309400	Weak transcription	Fetal Stomach	stomach
14	chr3:119305600-119314200	Weak transcription	Lung	lung
15	chr3:119305600-119314200	Weak transcription	HSMMtube	muscle
16	chr3:119305800-119314600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr3:119306000-119316800	Weak transcription	Pancreas	Pancrea
18	chr3:119306600-119314200	Weak transcription	Right Ventricle	heart
19	chr3:119307400-119311200	Weak transcription	Placenta	Placenta
20	chr3:119307400-119314200	Weak transcription	Right Atrium	heart
21	chr3:119307600-119316400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr3:119307800-119314400	Weak transcription	Adipose Nuclei	Adipose
23	chr3:119308000-119309200	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr3:119308000-119309200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr3:119308000-119310200	Weak transcription	Brain Hippocampus Middle	brain
26	chr3:119308200-119309400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:119308200-119310000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr3:119308200-119310600	Weak transcription	Spleen	Spleen
29	chr3:119308200-119311000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr3:119308200-119314000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr3:119308200-119314200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr3:119308200-119314800	Weak transcription	Aorta	Aorta
33	chr3:119308400-119309200	Weak transcription	Primary B cells from peripheral blood	blood
34	chr3:119308400-119309800	Strong transcription	Fetal Lung	lung
35	chr3:119308400-119310200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr3:119308400-119311000	ZNF genes & repeats	GM12878-XiMat	blood
37	chr3:119308400-119314200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr3:119308400-119314200	Weak transcription	Left Ventricle	heart
39	chr3:119308600-119309200	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr3:119308600-119314600	Weak transcription	Osteobl	bone
41	chr3:119308800-119309400	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr3:119308800-119311400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr3:119309000-119309400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr3:119309000-119311600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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