Variant report

Variant	rs11929807
Chromosome Location	chr4:87471466-87471467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11933110	1.00[AMR][1000 genomes]
rs11936622	1.00[AMR][1000 genomes]
rs11937511	1.00[AMR][1000 genomes]
rs11937815	1.00[AMR][1000 genomes]
rs11938746	1.00[AMR][1000 genomes]
rs11940149	1.00[AMR][1000 genomes]
rs11944714	1.00[AMR][1000 genomes]
rs11945220	1.00[AMR][1000 genomes]
rs61391256	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61757791	1.00[AMR][1000 genomes]
rs6821849	1.00[AMR][1000 genomes]
rs72868898	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72870603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72870604	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72870617	1.00[AMR][1000 genomes]
rs7693558	0.81[AFR][1000 genomes]
rs7698902	1.00[AMR][1000 genomes]
rs9684664	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv999470	chr4:87165663-87514552	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537164	chr4:87165663-87514552	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv1012836	chr4:87279206-87643558	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	esv2757071	chr4:87417291-87689533	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	esv2759264	chr4:87417291-87689533	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87462600-87474000	Weak transcription	Ovary	ovary
2	chr4:87462600-87478000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:87465400-87472000	Weak transcription	Brain Anterior Caudate	brain
4	chr4:87465400-87473800	Weak transcription	HMEC	breast
5	chr4:87466200-87478200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:87466600-87479400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:87468800-87473400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:87470400-87472400	Enhancers	NHEK	skin
9	chr4:87471000-87473800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:87471000-87475800	Weak transcription	Osteobl	bone
11	chr4:87471200-87473800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:87471200-87474000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:87471200-87478000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links