Variant report

Variant	rs11930912
Chromosome Location	chr4:143461480-143461481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143461464..143464431-chr4:143476844..143478769,2	MCF-7	breast:
2	chr4:143390775..143397216-chr4:143452311..143461627,17	MCF-7	breast:
3	chr4:143393069..143398763-chr4:143454567..143462510,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10519649	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11100748	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11100749	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12504375	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12504378	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12504770	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1425518	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1425519	0.88[EUR][1000 genomes]
rs1476122	0.84[EUR][1000 genomes]
rs16998558	0.80[EUR][1000 genomes]
rs17016344	0.84[EUR][1000 genomes]
rs17717651	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2059510	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2059511	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2059513	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2217016	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35854467	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4246729	0.85[EUR][1000 genomes]
rs4524461	0.88[EUR][1000 genomes]
rs4975306	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4975313	0.84[EUR][1000 genomes]
rs4975316	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4975317	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4975318	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58899027	0.87[EUR][1000 genomes]
rs60329859	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61104737	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6816875	0.90[EUR][1000 genomes]
rs7671198	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143438800-143462800	Weak transcription	Aorta	Aorta
2	chr4:143444800-143468400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:143453000-143464000	Weak transcription	Fetal Intestine Small	intestine
4	chr4:143456800-143468400	Weak transcription	HMEC	breast
5	chr4:143457000-143466600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:143458000-143463200	Enhancers	Primary hematopoietic stem cells	blood
7	chr4:143458800-143463400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr4:143460400-143461800	Enhancers	Primary T cells from cord blood	blood
9	chr4:143460400-143461800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:143460400-143463200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr4:143460600-143461800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr4:143461000-143462200	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr4:143461000-143463400	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr4:143461200-143463200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr4:143461400-143461800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr4:143461400-143461800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr4:143461400-143462000	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr4:143461400-143462000	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr4:143461400-143471000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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