Variant report

Variant	rs11938428
Chromosome Location	chr4:148014170-148014171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11731023	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11929880	0.88[AFR][1000 genomes]
rs11932704	0.86[AFR][1000 genomes]
rs11934394	0.88[AFR][1000 genomes]
rs11935350	0.88[AFR][1000 genomes]
rs11935438	0.88[AFR][1000 genomes]
rs11940408	0.88[AFR][1000 genomes]
rs11940672	0.87[AFR][1000 genomes]
rs11941436	0.88[AFR][1000 genomes]
rs11941445	0.88[AFR][1000 genomes]
rs11941654	0.82[AFR][1000 genomes]
rs11941745	0.88[AFR][1000 genomes]
rs11942353	0.88[AFR][1000 genomes]
rs11942559	0.88[AFR][1000 genomes]
rs11942610	0.88[AFR][1000 genomes]
rs11944039	0.88[AFR][1000 genomes]
rs11945471	0.87[AFR][1000 genomes]
rs11945733	0.88[AFR][1000 genomes]
rs11946351	0.88[AFR][1000 genomes]
rs11946419	0.87[AFR][1000 genomes]
rs11947471	0.87[AFR][1000 genomes]
rs12644218	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17022582	0.88[AFR][1000 genomes]
rs17022600	0.87[AFR][1000 genomes]
rs1911588	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35044197	0.85[AFR][1000 genomes]
rs35656690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60132894	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61415692	0.85[AFR][1000 genomes]
rs62343684	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62343687	0.88[AFR][1000 genomes]
rs62343688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62343689	0.88[AFR][1000 genomes]
rs62343690	0.87[AFR][1000 genomes]
rs62343693	0.88[AFR][1000 genomes]
rs62343694	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62343696	0.88[AFR][1000 genomes]
rs62343697	0.88[AFR][1000 genomes]
rs62343699	0.87[AFR][1000 genomes]
rs62343700	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148009800-148014400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:148009800-148017400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:148010000-148017000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:148010000-148022800	Weak transcription	NHLF	lung
5	chr4:148010200-148015000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:148010200-148017800	Weak transcription	Osteobl	bone
7	chr4:148010400-148021200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:148010800-148018000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:148013200-148016800	Weak transcription	Fetal Heart	heart

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