Variant report

Variant	rs11939835
Chromosome Location	chr4:143777628-143777629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143777512..143779890-chr4:144104610..144106802,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170185	Chromatin interaction
ENSG00000250326	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10030770	0.80[ASN][1000 genomes]
rs11100761	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11736709	0.82[ASN][1000 genomes]
rs13112916	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13122287	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13145724	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1441418	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1444949	0.80[ASN][1000 genomes]
rs1444950	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2218240	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28416530	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4575951	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4690728	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4690729	0.85[ASN][1000 genomes]
rs4690730	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58445560	0.82[ASN][1000 genomes]
rs6537129	0.85[ASN][1000 genomes]
rs6537130	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6811022	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6813785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6818484	0.80[ASN][1000 genomes]
rs6822703	0.80[ASN][1000 genomes]
rs6823627	0.80[ASN][1000 genomes]
rs6828896	0.85[ASN][1000 genomes]
rs6831204	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6838663	0.81[ASN][1000 genomes]
rs6844759	0.80[ASN][1000 genomes]
rs6849626	0.80[ASN][1000 genomes]
rs6850278	0.80[ASN][1000 genomes]
rs72728694	0.80[ASN][1000 genomes]
rs7656375	0.82[ASN][1000 genomes]
rs7660533	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7663475	0.80[ASN][1000 genomes]
rs7668263	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670139	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7683364	0.80[ASN][1000 genomes]
rs7683962	0.80[ASN][1000 genomes]
rs9994364	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143768600-143781200	Weak transcription	Psoas Muscle	Psoas
2	chr4:143777600-143777800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:143777600-143777800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr4:143777600-143777800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:143777600-143779600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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