Variant report

Variant	rs11940032
Chromosome Location	chr4:81460931-81460932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10034974	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1038532	0.81[ASN][1000 genomes]
rs10857174	0.89[ASN][1000 genomes]
rs11099253	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11731831	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11937407	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11944437	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944925	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12510415	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12647313	0.93[ASN][1000 genomes]
rs12650570	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13111449	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13141564	0.80[ASN][1000 genomes]
rs13142845	0.99[ASN][1000 genomes]
rs13152520	0.81[ASN][1000 genomes]
rs1352076	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1385890	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1390252	0.87[EUR][1000 genomes]
rs1486022	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1495489	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1495493	0.97[ASN][1000 genomes]
rs1843563	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1872576	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1874336	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1905967	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1908550	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1971301	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2132267	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2132268	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2132269	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2132271	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2172878	0.92[ASN][1000 genomes]
rs28493682	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2867781	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2903671	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34269363	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4693494	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4693495	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4693537	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5019005	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55940038	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58593245	0.87[EUR][1000 genomes]
rs6534967	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6535016	0.89[ASN][1000 genomes]
rs6813764	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6823400	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6826104	0.93[ASN][1000 genomes]
rs6827369	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6831485	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6832233	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6835442	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7658613	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7660815	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7666589	0.89[ASN][1000 genomes]
rs7674255	0.83[ASN][1000 genomes]
rs7685226	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7686715	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7693460	0.83[ASN][1000 genomes]
rs7695414	0.88[ASN][1000 genomes]
rs9307720	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs967941	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9993620	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11940032	MRPS18C	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81460000-81461600	Weak transcription	NHDF-Ad	bronchial
2	chr4:81460600-81461200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:81460800-81462800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr4:81460800-81463400	Enhancers	Primary T helper cells PMA-I stimulated	--

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