Variant report

Variant	rs11945715
Chromosome Location	chr4:68747496-68747497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10016079	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10030290	0.85[EUR][1000 genomes]
rs11929790	0.85[EUR][1000 genomes]
rs11936544	0.97[EUR][1000 genomes]
rs11936547	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13435091	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13435462	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13435828	0.85[EUR][1000 genomes]
rs28434494	0.85[EUR][1000 genomes]
rs28541914	0.85[EUR][1000 genomes]
rs28648375	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28670412	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28683051	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28722166	0.85[EUR][1000 genomes]
rs28736832	0.97[EUR][1000 genomes]
rs28816094	0.97[EUR][1000 genomes]
rs28876815	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28896234	0.97[EUR][1000 genomes]
rs58285634	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7670723	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9998258	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879214	chr4:68389841-68789778	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv829960	chr4:68649237-68809629	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1007376	chr4:68693483-69008202	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv1811886	chr4:68725776-68780041	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv879219	chr4:68743032-69028913	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:68741200-68751400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:68741400-68751800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:68741400-68752800	Weak transcription	Esophagus	oesophagus
4	chr4:68744800-68752800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr4:68746000-68748800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr4:68746400-68747800	Enhancers	Brain Germinal Matrix	brain
7	chr4:68746400-68747800	Enhancers	Fetal Muscle Leg	muscle
8	chr4:68746600-68748200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:68746600-68749600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr4:68746800-68747600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr4:68746800-68747600	Enhancers	NHEK	skin
12	chr4:68746800-68747800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:68746800-68747800	Enhancers	NHDF-Ad	bronchial
14	chr4:68746800-68748200	Enhancers	HSMM	muscle
15	chr4:68747000-68747600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:68747200-68747600	Enhancers	NHLF	lung
17	chr4:68747200-68747800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr4:68747200-68747800	Enhancers	HSMMtube	muscle
19	chr4:68747200-68750200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:68747200-68751600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr4:68747400-68747800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:68747400-68747800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links