Variant report

Variant	rs11947952
Chromosome Location	chr4:144252964-144252965
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:144249067..144251120-chr4:144252809..144255702,2	K562	blood:
2	chr4:144252887..144254426-chr4:144256311..144258181,2	K562	blood:
3	chr4:144251943..144253888-chr4:144255920..144257556,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109458	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10012713	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2013856	0.91[ASN][1000 genomes]
rs300890	0.93[ASN][1000 genomes]
rs300891	0.93[ASN][1000 genomes]
rs300892	0.92[ASN][1000 genomes]
rs300893	0.92[ASN][1000 genomes]
rs300894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs300895	0.92[ASN][1000 genomes]
rs300899	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300901	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs300902	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs300903	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs300904	0.93[ASN][1000 genomes]
rs300905	0.93[ASN][1000 genomes]
rs300911	0.83[ASN][1000 genomes]
rs300912	0.83[ASN][1000 genomes]
rs300913	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs300914	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs300915	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs300917	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs300918	0.86[ASN][1000 genomes]
rs300919	0.95[ASN][1000 genomes]
rs300943	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs300946	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs300947	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs300949	0.84[EUR][1000 genomes]
rs300951	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs300953	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs476417	0.83[EUR][1000 genomes]
rs568685	0.91[ASN][1000 genomes]
rs592349	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62337488	0.93[ASN][1000 genomes]
rs624170	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs624189	0.93[ASN][1000 genomes]
rs666542	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv3332574	chr4:144239396-144259577	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
3	nsv1026110	chr4:144239825-144292148	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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