Variant report

Variant	rs11952146
Chromosome Location	chr5:60818863-60818864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60784768..60786747-chr5:60817195..60819874,2	MCF-7	breast:

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10041978	0.92[ASN][1000 genomes]
rs1045352	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10514910	0.87[CHB][hapmap]
rs10939900	0.80[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs10939901	0.80[ASN][1000 genomes]
rs10939903	0.92[ASN][1000 genomes]
rs10939905	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11742658	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11743711	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11747564	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11749200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11950318	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11954430	0.98[ASN][1000 genomes]
rs12187112	0.88[AMR][1000 genomes]
rs12188685	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12188710	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12189001	0.80[ASN][1000 genomes]
rs12518479	0.80[ASN][1000 genomes]
rs12519658	0.81[CHB][hapmap]
rs12520628	0.80[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs12522647	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13156100	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13157657	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13157831	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158413	0.97[ASN][1000 genomes]
rs13158675	0.80[ASN][1000 genomes]
rs13159018	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13159166	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13160801	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13162358	0.80[ASN][1000 genomes]
rs13162694	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13163970	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13166934	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13169711	0.80[ASN][1000 genomes]
rs13170262	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13171497	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13171757	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13172080	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13172084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13178686	0.80[ASN][1000 genomes]
rs13179091	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13179617	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13181015	0.80[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap]
rs13185068	1.00[ASN][1000 genomes]
rs13185783	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13186194	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13188685	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348716	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1363892	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1374043	0.98[ASN][1000 genomes]
rs1445976	1.00[ASN][1000 genomes]
rs1445979	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1445980	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445981	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1477355	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16892286	0.81[CHB][hapmap]
rs16892307	0.81[CHB][hapmap]
rs16892374	0.81[CHB][hapmap]
rs17424296	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1986252	0.98[ASN][1000 genomes]
rs2034239	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2053693	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2053694	1.00[ASN][1000 genomes]
rs2276987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28610339	0.88[AMR][1000 genomes]
rs35262187	0.80[ASN][1000 genomes]
rs4276369	0.94[JPT][hapmap]
rs4392578	0.80[ASN][1000 genomes]
rs4484384	0.80[ASN][1000 genomes]
rs4604142	0.80[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs55838118	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56035042	0.80[ASN][1000 genomes]
rs60529601	0.80[ASN][1000 genomes]
rs60886975	0.80[ASN][1000 genomes]
rs62368660	0.80[ASN][1000 genomes]
rs6449528	0.80[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs6449529	0.80[ASN][1000 genomes]
rs6449530	0.80[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap]
rs6449531	0.88[AMR][1000 genomes]
rs6449532	0.88[AMR][1000 genomes]
rs6449533	0.82[AMR][1000 genomes]
rs6449535	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66775554	1.00[ASN][1000 genomes]
rs6860608	0.80[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap]
rs6865624	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6873712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6874264	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6874266	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6877610	0.80[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs6878927	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6879809	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6881765	0.81[CHD][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs6881799	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6882136	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6885005	0.88[AMR][1000 genomes]
rs6890351	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6894675	0.88[AMR][1000 genomes]
rs6895046	0.98[ASN][1000 genomes]
rs6898746	0.99[ASN][1000 genomes]
rs7443602	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7700289	0.80[ASN][1000 genomes]
rs7701440	0.80[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap]
rs7714457	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7714712	0.88[AMR][1000 genomes]
rs7717082	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7719647	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7722810	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7724551	0.80[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap]
rs7727824	0.88[AMR][1000 genomes]
rs7732234	0.98[ASN][1000 genomes]
rs7734879	0.88[AMR][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60760600-60824800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:60760800-60821200	Weak transcription	Esophagus	oesophagus
3	chr5:60761000-60820800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:60764000-60820600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:60764800-60821000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr5:60767400-60821200	Weak transcription	Lung	lung
7	chr5:60767400-60837400	Weak transcription	Spleen	Spleen
8	chr5:60767600-60820800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:60781400-60821000	Weak transcription	Fetal Kidney	kidney
10	chr5:60785800-60820800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr5:60787000-60820600	Weak transcription	Hela-S3	cervix
12	chr5:60788800-60821800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr5:60791400-60821200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr5:60791400-60821400	Weak transcription	Osteobl	bone
15	chr5:60792600-60821400	Weak transcription	Fetal Intestine Large	intestine
16	chr5:60792800-60820200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:60792800-60820200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr5:60792800-60821400	Weak transcription	NH-A	brain
19	chr5:60793400-60820800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr5:60793400-60821000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr5:60797000-60821200	Weak transcription	Gastric	stomach
22	chr5:60798800-60820800	Weak transcription	Aorta	Aorta
23	chr5:60803400-60820000	Weak transcription	HSMMtube	muscle
24	chr5:60804800-60821200	Weak transcription	NHDF-Ad	bronchial
25	chr5:60805600-60820000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr5:60805600-60820800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr5:60807600-60820800	Weak transcription	Fetal Stomach	stomach
28	chr5:60807600-60829800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr5:60808200-60821600	Weak transcription	Fetal Thymus	thymus
30	chr5:60808600-60820000	Weak transcription	Brain Angular Gyrus	brain
31	chr5:60808800-60820200	Weak transcription	Primary T cells from cord blood	blood
32	chr5:60810600-60821000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr5:60811400-60820800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr5:60812400-60827200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr5:60813000-60820600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr5:60813200-60819800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr5:60813200-60821200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr5:60813400-60819600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr5:60813400-60821200	Weak transcription	Adipose Nuclei	Adipose
40	chr5:60814400-60820800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr5:60814400-60820800	Weak transcription	Fetal Intestine Small	intestine
42	chr5:60814800-60820400	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr5:60815000-60820800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr5:60815000-60821000	Weak transcription	NHEK	skin
45	chr5:60815200-60819000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr5:60815200-60820800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr5:60815200-60821600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr5:60815400-60833000	Weak transcription	Fetal Brain Male	brain
49	chr5:60815600-60820800	Weak transcription	Fetal Muscle Leg	muscle
50	chr5:60815800-60820800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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